Evidence map›Paper›PMID 30240499›Full record

ArticleHuman brain mapping2019

The role of diversity in data-driven analysis of multi-subject fMRI data: Comparison of approaches based on independence and sparsity using global performance metrics.

Qunfang Long, Suchita Bhinge, Yuri Levin-Schwartz, Zois Boukouvalas, Vince D Calhoun, Tülay Adalı

Abstract readComparative Study
In one paragraph

Article in Human brain mapping, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Qunfang LongDepartment of CSEE, University of Maryland Baltimore County, Baltimore, Maryland.ORCID 0000-0002-6323-6366
Suchita BhingeDepartment of CSEE, University of Maryland Baltimore County, Baltimore, Maryland.
Yuri Levin-SchwartzDepartment of EMPH, Icahn School of Medicine at Mount Sinai, New York, New York.
Zois BoukouvalasDepartment of ENME, University of Maryland College Park, College Park, Maryland.
Vince D CalhounThe Mind Research Network, Albuquerque, New Mexico.
Tülay AdalıDepartment of CSEE, University of Maryland Baltimore County, Baltimore, Maryland.

Funding

Transcranial Direct Current Stimulation for Treatment of Auditory Verbal HalluciP20GM103472 · NIGMS · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D · 2012 to 2017
$14.3M
Multivariate methods for identifying multitask/multimodal brain imaging biomarkersR01EB006841 · NIBIB · THE MIND RESEARCH NETWORK · PI VINCE D CALHOUN, Sergey Plis · 2007 to 2026
$9.8M
Research Training Program in Pediatric ExposomicsT32HD049311 · NICHD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KECIA Nicole CARROLL, Robert O Wright · 2007 to 2026
$7.4M
Male/Female differences in psychosis and mood disorders:Dynamic imaging-genomic models for characterizing and predicting psychosis and mood dR01MH118695 · NIMH · GEORGIA STATE UNIVERSITY · PI ADALI, TULAY, CALHOUN, VINCE D · 2019 to 2023
$3.8M
Unified multivariate data-driven solutions for static and dynamic brain connectivityR01EB020407 · NIBIB · THE MIND RESEARCH NETWORK · PI ADALI, TULAY, CALHOUN, VINCE D · 2015 to 2018
$2.7M
National Science Foundation NSF 1631838National Science Foundation NSF-CCF 1618551NIBIB NIH HHS R01 EB006841NIBIB NIH HHS R01 EB020407NICHD NIH HHS T32 HD049311NIGMS NIH HHS P20 GM103472NIH HHS NIH P20GM103472NIH HHS NIH R01EB 020407NIMH NIH HHS R01 MH118695
6 · The paper itself

Abstract

Data-driven methods have been widely used in functional magnetic resonance imaging (fMRI) data analysis. They extract latent factors, generally, through the use of a simple generative model. Independent component analysis (ICA) and dictionary learning (DL) are two popular data-driven methods that are based on two different forms of diversity-statistical properties of the data-statistical independence for ICA and sparsity for DL. Despite their popularity, the comparative advantage of emphasizing one property over another in the decomposition of fMRI data is not well understood. Such a comparison is made harder due to the differences in the modeling assumptions between ICA and DL, as well as within different ICA algorithms where each algorithm exploits a different form of diversity. In this paper, we propose the use of objective global measures, such as time course frequency power ratio, network connection summary, and graph theoretical metrics, to gain insight into the role that different types of diversity have on the analysis of fMRI data. Four ICA algorithms that account for different types of diversity and one DL algorithm are studied. We apply these algorithms to real fMRI data collected from patients with schizophrenia and healthy controls. Our results suggest that no one particular method has the best performance using all metrics, implying that the optimal method will change depending on the goal of the analysis. However, we note that in none of the scenarios we test the highly popular Infomax provides the best performance, demonstrating the cost of exploiting limited form of diversity.

Indexed as

AlgorithmsData Interpretation, StatisticalAdultBrainFemaleFunctional NeuroimagingHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMaleMiddle AgedNerve NetPrincipal Component AnalysisSchizophreniadata-driven analysisdictionary learningdiversityfMRI analysisglobal metricICAindependenceperformance evaluationsparsity

Identifiers

PMID30240499
PMCPMC6392437

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.