Evidence map›Paper›PMID 30240188›Full record

ArticleACS chemical biology2018

Discovery and Functional Characterization of a Yeast Sugar Alcohol Phosphatase.

Yi-Fan Xu, Wenyun Lu, Jonathan C Chen, Sarah A Johnson, Patrick A Gibney, David G Thomas, Greg Brown, Amanda L May, Shawn R Campagna, Alexander F Yakunin and 2 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Yi-Fan XuLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.ORCID 0000-0002-7258-5699
Wenyun LuLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.
Jonathan C ChenLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.
Sarah A JohnsonLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.
Patrick A GibneyLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.
David G ThomasLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.
Greg BrownDepartment of Chemical Engineering and Applied Chemistry, Banting and Best Department of Medical Research , University of Toronto , Toronto , Ontario M5S 3E5 , Canada.
Amanda L MayDepartment of Chemistry , University of Tennessee , Knoxville , Tennessee 37996 , United States.
Shawn R CampagnaDepartment of Chemistry , University of Tennessee , Knoxville , Tennessee 37996 , United States.
Alexander F YakuninDepartment of Chemical Engineering and Applied Chemistry, Banting and Best Department of Medical Research , University of Toronto , Toronto , Ontario M5S 3E5 , Canada.ORCID 0000-0003-0813-6490
David BotsteinLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.
Joshua D RabinowitzLewis Sigler Institute for Integrative Genomics , Princeton University , Princeton , New Jersey 08544 , United States.ORCID 0000-0002-1247-4727
Princeton University · USUniversity of Tennessee at Knoxville · USUniversity of Toronto · CA

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Tumor cell metabolism in actionR01CA163591 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI JOSHUA D RABINOWITZ, Eileen P. White · 2012 to 2026
$7.0M
Revealing cancer metabolism via mass spectrometry and isotope tracersR50CA211437 · NCI · PRINCETON UNIVERSITY · PI Wenyun Lu · 2016 to 2026
$1.3M
NCI NIH HHS R01 CA163591NCI NIH HHS R50 CA211437NIGMS NIH HHS P50 GM071508
6 · The paper itself

Abstract

Sugar alcohols (polyols) exist widely in nature. While some specific sugar alcohol phosphatases are known, there is no known phosphatase for some important sugar alcohols (e.g., sorbitol-6-phosphate). Using liquid chromatography-mass spectrometry-based metabolomics, we screened yeast strains with putative phosphatases of unknown function deleted. We show that the yeast gene YNL010W, which has close homologues in all fungi species and some plants, encodes a sugar alcohol phosphatase. We term this enzyme, which hydrolyzes sorbitol-6-phosphate, ribitol-5-phosphate, and (d)-glycerol-3-phosphate, polyol phosphatase 1 or PYP1. Polyol phosphates are structural analogs of the enediol intermediate of phosphoglucose isomerase (Pgi). We find that sorbitol-6-phosphate and ribitol-5-phosphate inhibit Pgi and that Pyp1 activity is important for yeast to maintain Pgi activity in the presence of environmental sugar alcohols. Pyp1 expression is strongly positively correlated with yeast growth rate, presumably because faster growth requires greater glycolytic and accordingly Pgi flux. Thus, yeast express the previously uncharacterized enzyme Pyp1 to prevent inhibition of glycolysis by sugar alcohol phosphates. Pyp1 may be useful for engineering sugar alcohol production.

Indexed as

Gene DeletionGlucose-6-Phosphate IsomeraseHydrolysisPhosphoric Monoester HydrolasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSugar PhosphatesGlucose-6-Phosphate IsomerasePhosphoric Monoester HydrolasesPYP1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSugar Phosphates

Identifiers

PMID30240188
PMCPMC6466636
OpenAlexW2891980177

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.