Evidence map›Paper›PMID 30239928›Full record

ArticleNucleic acids research2019

UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands.

François Bonnardel, Julien Mariethoz, Sebastian Salentin, Xavier Robin, Michael Schroeder, Serge Perez, Frédérique Lisacek, Anne Imberty

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 108 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Microbial Lectin-Targeting Mucus: A Glycobioinformatic Approach.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

François BonnardelUniv. Grenoble Alpes, CNRS, CERMAV, 38000 Grenoble, France.
Julien MariethozProteome Informatics Group, SIB Swiss Institute of Bioinformatics, CH-1227 Geneva, Switzerland.
Sebastian SalentinBiotechnology Center (BIOTEC), TU Dresden, Tatzberg 47-49, 01307 Dresden, Germany.
Xavier RobinBiozentrum, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland.
Michael SchroederBiotechnology Center (BIOTEC), TU Dresden, Tatzberg 47-49, 01307 Dresden, Germany.
Serge PerezUniv. Grenoble Alpes, CNRS, DPM, 38000 Grenoble, France.
Frédérique LisacekProteome Informatics Group, SIB Swiss Institute of Bioinformatics, CH-1227 Geneva, Switzerland.
Anne ImbertyUniv. Grenoble Alpes, CNRS, CERMAV, 38000 Grenoble, France.
University of Geneva · CHCentre National de la Recherche Scientifique · FRTechnische Universität Dresden · DESIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lectins, and related receptors such as adhesins and toxins, are glycan-binding proteins from all origins that decipher the glycocode, i.e. the structural information encoded in the conformation of complex carbohydrates present on the surface of all cells. Lectins are still poorly classified and annotated, but since their functions are based on ligand recognition, their 3D-structures provide a solid foundation for characterization. UniLectin3D is a curated database that classifies lectins on origin and fold, with cross-links to literature, other databases in glycosciences and functional data such as known specificity. The database provides detailed information on lectins, their bound glycan ligands, and features their interactions using the Protein-Ligand Interaction Profiler (PLIP) server. Special care was devoted to the description of the bound glycan ligands with the use of simple graphical representation and numerical format for cross-linking to other databases in glycoscience. We conceived the design of the database architecture and the navigation tools to account for all organisms, as well as to search for oligosaccharide epitopes complexed within specified binding sites. UniLectin3D is accessible at https://www.unilectin.eu/unilectin3D.

Indexed as

Databases, ProteinProtein ConformationBinding SitesComputational BiologyHumansInternetLectinsLigandsModels, MolecularPolysaccharidesProtein BindingReceptors, Cell SurfaceLectinsLigandsPolysaccharidesReceptors, Cell Surfacesaccharide-binding proteins

Identifiers

PMID30239928
PMCPMC6323968
OpenAlexW2889721499

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.