Evidence map›Paper›PMID 30239679›Full record

ArticleDatabase : the journal of biological databases and curation2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Lisa Harper, Jacqueline Campbell, Ethalinda K S Cannon, Sook Jung, Monica Poelchau, Ramona Walls, Carson Andorf, Elizabeth Arnaud, Tanya Z Berardini, Clayton Birkett and 42 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Database : the journal of biological databases and curation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

  1. Article
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  3. Article
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  5. The future is FAIR: a community framework for enhanced data management and data sharing.Database : the journal of biological databases and curation · 2026
    Article
  6. Article
  7. Order from entropy: big data from FAIR data cohorts in the digital age of plant breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Ensembl 2024.Nucleic acids research · 2024
    Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

52 authors.

Lisa HarperCorn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
Jacqueline CampbellComputer Science, Iowa State University, Ames, IA, USA.
Ethalinda K S CannonCorn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
Sook JungHorticulture, Washington State University, Pullman, WA, USA.
Monica PoelchauNational Agricultural Library, USDA Agricultural Research Service, Beltsville, MD, USA.
Ramona WallsCyverse, University of Arizona, Tucson, AZ, USA.
Carson AndorfCorn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
Elizabeth ArnaudBioversity International, Informatics Unit, Conservation and Availability Programme, Parc Scientifique Agropolis II, Montpellier, France.
Tanya Z BerardiniThe Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA, USA.
Clayton BirkettUSDA, Plant, Soil and Nutrition Research, Ithaca, NY, USA.
Steve CannonCorn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
James CarsonTexas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA.
Bradford CondonEntomology and Plant Pathology, University of Tennessee Knoxville, Knoxville, TN, USA.
Laurel CooperDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Nathan DunnEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Christine G ElsikDivision of Animal Sciences and Division of Plant Sciences, University of Missouri, Columbia, MO, USA.
Andrew FarmerNational Center for Genome Resources, Santa Fe, NM, USA.
Stephen P FicklinHorticulture, Washington State University, Pullman, WA, USA.
David GrantCorn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
Emily GrauNational Center for Genome Resources, Santa Fe, NM, USA.
Nic HerndonEcology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA.
Zhi-Liang HuAnimal Science, Iowa State University, Ames, USA.
Jodi HumannHorticulture, Washington State University, Pullman, WA, USA.
Pankaj JaiswalDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Clement JonquetLaboratory of Informatics, Robotics, Microelectronics of Montpellier, University of Montpellier & CNRS, Montpellier, France.
Marie-Angélique LaporteBioversity International, Informatics Unit, Conservation and Availability Programme, Parc Scientifique Agropolis II, Montpellier, France.
Pierre LarmandeDIADE, University of Montpellier, IRD, Montpellier, France.
Gerard LazoCrop Improvement and Genetics Research Unit, USDA-ARS, Albany, CA, USA.
Fiona McCarthySchool of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ, USA.
Naama MendaBoyce Thompson Institute, Ithaca, NY, USA.
Christopher J MungallGenomics Division, Lawrence Berkeley National Laboratories, Berkeley, CA, USA.
Monica C Munoz-TorresGenomics Division, Lawrence Berkeley National Laboratories, Berkeley, CA, USA.
Sushma NaithaniDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Rex NelsonCorn Insects and Crop Genetics Research Unit, USDA-ARS, Ames, IA, USA.
Daureen NesdillMarriott Library, University of Utah, Salt Lake City, UT, USA.
Carissa ParkAnimal Science, Iowa State University, Ames, USA.
James ReecyAnimal Science, Iowa State University, Ames, USA.
Leonore ReiserThe Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA, USA.
Lacey-Anne SandersonDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, Canada.
Taner Z SenCrop Improvement and Genetics Research Unit, USDA-ARS, Albany, CA, USA.
Margaret StatonEntomology and Plant Pathology, University of Tennessee Knoxville, Knoxville, TN, USA.
Sabarinath SubramaniamThe Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA, USA.
Marcela Karey Tello-RuizPlant Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Victor UndaHorticulture, Washington State University, Pullman, WA, USA.
Deepak UnniEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Liya WangPlant Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Doreen WareUSDA, Plant, Soil and Nutrition Research, Ithaca, NY, USA.
Jill WegrzynEcology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA.
Jason WilliamsCold Spring Harbor Laboratory, DNA Learning Center, Cold Spring Harbor, NY, USA.
Margaret WoodhouseDepartment of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA.
Jing YuHorticulture, Washington State University, Pullman, WA, USA.
Doreen MainHorticulture, Washington State University, Pullman, WA, USA.

Funding

Web-based visualization of coronavirus genomes and proteinsR01HG004483 · NHGRI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Ian H Holmes · 2007 to 2026
$9.3M
Novel Web-based Tools for Collaborative Community-Driven Genome Feature AnnotatioR01GM080203 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Ian H Holmes · 2007 to 2026
$8.5M
NHGRI NIH HHS R01 HG004483NIGMS NIH HHS R01 GM080203
6 · The paper itself

Abstract

The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require data management plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated and shared, so that they can be easily utilized in future analyses. AgBioData (https://www.agbiodata.org) is a consortium of people working at agricultural biological databases, data archives and knowledgbases who strive to identify common issues in database development, curation and management, with the goal of creating database products that are more Findable, Accessible, Interoperable and Reusable. We strive to promote authentic, detailed, accurate and explicit communication between all parties involved in scientific data. As a step toward this goal, we present the current state of biocuration, ontologies, metadata and persistence, database platforms, programmatic (machine) access to data, communication and sustainability with regard to data curation. Each section describes challenges and opportunities for these topics, along with recommendations and best practices.

Indexed as

AgricultureDatabases, GeneticGenomicsBreedingGene OntologyMetadataSurveys and Questionnaires

Identifiers

PMID30239679
PMCPMC6146126

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.