Evidence map›Paper›PMID 30237867›Full record

ArticleMolecular autism2018

Clustering the autisms using glutamate synapse protein interaction networks from cortical and hippocampal tissue of seven mouse models.

Emily A Brown, Jonathan D Lautz, Tessa R Davis, Edward P Gniffke, Alison A W VanSchoiack, Steven C Neier, Noah Tashbook, Chiara Nicolini, Margaret Fahnestock, Adam G Schrum and 1 more

Open access · goldAbstract read
In one paragraph

Article in Molecular autism, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

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  12. The Shank3Frontiers in neuroscience · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Emily A Brown1Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA USA.
Jonathan D Lautz1Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA USA.
Tessa R Davis2Department of Immunology, Mayo Clinic College of Medicine, Rochester, MN USA.
Edward P Gniffke1Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA USA.
Alison A W VanSchoiack1Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA USA.
Steven C Neier2Department of Immunology, Mayo Clinic College of Medicine, Rochester, MN USA.
Noah Tashbook1Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA USA.
Chiara Nicolini8Department of Psychiatry & Behavioural Neurosciences, McMaster University, Hamilton, ON Canada.
Margaret Fahnestock8Department of Psychiatry & Behavioural Neurosciences, McMaster University, Hamilton, ON Canada.
Adam G Schrum9Departments of Molecular Microbiology & Immunology, Surgery and Bioengineering, University of Missouri, Columbia, MO USA.
Stephen E P Smith1Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA USA.ORCID 0000-0003-4180-573X
Allen Institute for Brain Science · USMcMaster University · CABroad Institute · USMayo Clinic · USUniversity of Missouri · US

Funding

Investigating the synaptic pathology of AutismR01MH113545 · NIMH · SEATTLE CHILDREN'S HOSPITAL · PI Stephen Edward Paucha Smith · 2018 to 2026
$5.8M
Postdoctoral Training Program in AIDS-related ResearchT32AI007386 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY, ENGELMAN, ALAN N. · 1990 to 2023
$5.3M
PHD TRAINING PROGRAM IN BASIC IMMUNOLOGYT32AI007425 · NIAID · MAYO CLINIC ROCHESTER · PI SHAPIRO, VIRGINIA SMITH · 1995 to 2020
$3.6M
Protein Interaction Network Analysis to Test the Synaptic Hypothesis of AutismR00MH102244 · NIMH · SEATTLE CHILDREN'S HOSPITAL · PI SMITH, STEPHEN EDWARD PAUCHA · 2015 to 2017
$734k
NIAID NIH HHS T32 AI007386NIAID NIH HHS T32 AI007425NIMH NIH HHS R00 MH102244NIMH NIH HHS R01 MH113545
6 · The paper itself

Abstract

Background: Autism spectrum disorders (ASDs) are a heterogeneous group of behaviorally defined disorders and are associated with hundreds of rare genetic mutations and several environmental risk factors. Mouse models of specific risk factors have been successful in identifying molecular mechanisms associated with a given factor. However, comparisons among different models to elucidate underlying common pathways or to define clusters of biologically relevant disease subtypes have been complicated by different methodological approaches or different brain regions examined by the labs that developed each model. Here, we use a novel proteomic technique, quantitative multiplex co-immunoprecipitation or QMI, to make a series of identical measurements of a synaptic protein interaction network in seven different animal models. We aim to identify molecular disruptions that are common to multiple models. Methods: QMI was performed on 92 hippocampal and cortical samples taken from seven mouse models of ASD: Shank3B, Shank3Δex4-9, Ube3a Results: Each model displayed a unique set of disrupted interactions, but some interactions were disrupted in multiple models. These tended to be interactions that are known to change with synaptic activity. Clustering revealed potential relationships among models and suggested deficits in AKT signaling in Ube3a Conclusions: These data highlight the great heterogeneity among models, but suggest that high-dimensional measures of a synaptic protein network may allow differentiation of subtypes of ASD with shared molecular pathology.

Indexed as

Disease Models, AnimalAnimalsAutism Spectrum DisorderCluster AnalysisFemaleFrontal LobeGenotypeGlutamic AcidHippocampusMaleMiceProtein Interaction MapsProteomicsSynapsesGlutamic Acid

Identifiers

PMID30237867
PMCPMC6139139
OpenAlexW2891523362

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.