Evidence map›Paper›PMID 30236889›Full record

ArticleAnalytical biochemistry2018

Adapting the chemical unfolding assay for high-throughput protein screening using experimental and spectroscopic corrections.

J Alaina Floyd, Christine Siska, Rutilio H Clark, Bruce A Kerwin, Jeremy M Shaver

Open access · hybridAbstract read
In one paragraph

Article in Analytical biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

J Alaina FloydJust Biotherapeutics, Inc., 401 Terry Ave N., Seattle, WA, 98109, USA.
Christine SiskaJust Biotherapeutics, Inc., 401 Terry Ave N., Seattle, WA, 98109, USA.
Rutilio H ClarkJust Biotherapeutics, Inc., 401 Terry Ave N., Seattle, WA, 98109, USA.
Bruce A KerwinJust Biotherapeutics, Inc., 401 Terry Ave N., Seattle, WA, 98109, USA.
Jeremy M ShaverJust Biotherapeutics, Inc., 401 Terry Ave N., Seattle, WA, 98109, USA. Electronic address: jeremy.shaver@just.bio.
Just Biotherapeutics (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The chemical unfolding (denaturation) assay can be used to calculate the change in the Gibbs free energy of unfolding, ΔG, and inflection point of unfolding, to collectively inform on molecule stability. Here, we evaluated methods for calculating the ΔG across 23 monoclonal antibody sequence variants. These methods are based on how the measured output (intrinsic fluorescence intensity) is treated, including utilizing (a) a single wavelength, (b) a ratio of two wavelengths, (c) a ratio of a single wavelength to an area, and (d) a scatter correction plus a ratio of a single wavelength to an area. When applied to the variants, the three ratio methods showed comparable results, with a similar pooled standard deviation for the ΔG calculation, while the single-wavelength method is shown as inadequate for the data in this study. However, when light scattering is introduced to simulated data, only the scatter-correction area normalization method proves robust. Using this method, common plate-based spectrophotometers found in many laboratories can be used for high-throughput screening of mAb variants and formulation stability studies.

Indexed as

Calorimetry, Differential ScanningLightModels, ChemicalProtein ConformationProtein DenaturationProtein FoldingProteinsProtein UnfoldingThermodynamicsProteinsAntibodyChemical unfoldingDenaturationEquilibration timeFluorescenceHigh-throughputScatter correction

Identifiers

PMID30236889
PMCPMC6226613
OpenAlexW2892045897

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.