Evidence map›Paper›PMID 30233821›Full record

ArticleESMO open2018

Somatic cancer genetics in the UK: real-world data from phase I of the Cancer Research UK Stratified Medicine Programme.

Colin R Lindsay, Emily C Shaw, Fiona Blackhall, Kevin G Blyth, James D Brenton, Anshuman Chaturvedi, Noel Clarke, Craig Dick, Thomas R J Evans, Geoff Hall and 19 more

Open access · goldAbstract read
In one paragraph

Article in ESMO open, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 17 institutions in 1 country.

Colin R LindsayDepartment of Medical Oncology, The Christie NHS Foundation Trust, Manchester, UK.ORCID 0000-0001-8167-5461
Emily C ShawCancer Research UK, London, UK.
Fiona BlackhallDepartment of Medical Oncology, The Christie NHS Foundation Trust, Manchester, UK.
Kevin G BlythGlasgow Experimental Cancer Medicine Centre, Glasgow, UK.
James D BrentonCancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.
Anshuman ChaturvediDepartment of Histopathology, University Hospital of South Manchester NHS Foundation Trust, Manchester, UK.
Noel ClarkeChristie and Salford Royal NHS Foundation Trusts, Manchester, UK.
Craig DickGlasgow Experimental Cancer Medicine Centre, Glasgow, UK.
Thomas R J EvansGlasgow Experimental Cancer Medicine Centre, Glasgow, UK.
Geoff HallLeeds Experimental Cancer Medicine Centre, Leeds, UK.
Andrew M HanbyLeeds Experimental Cancer Medicine Centre, Leeds, UK.
David J HarrisonSchool of Medicine, University of St Andrews, St Andrews, UK.
Stephen R D JohnstonDepartment of Medical Oncology, Royal Marsden Hospital, London, UK.
Malcolm D MasonVelindre Hospital, Cardiff University, Cardiff, UK.
Dion MortonAcademic Department of Surgery, University of Birmingham, Birmingham, UK.
Julia Newton-BishopLeeds Experimental Cancer Medicine Centre, Leeds, UK.
Andrew G NicholsonRoyal Brompton and Harefield NHS Foundation Trust, London, UK.
Karin A OienGlasgow Experimental Cancer Medicine Centre, Glasgow, UK.
Sanjay PopatInstitute of Cancer Research Experimental Cancer Medicine Centre, London, UK.
Doris RasslCancer Research UK Cambridge Centre and Cambridge Experimental Cancer Medicine Centre, Cambridge, UK.
Rowena SharpeCancer Research UK, London, UK.
Phillipe TaniereBirmingham Experimental Cancer Medicine Centre, Birmingham, UK.
Ian WalkerCancer Research UK, London, UK.
William A WallaceEdinburgh Experimental Cancer Medicine Centre, Edinburgh, UK.
Nicholas P WestLeeds Experimental Cancer Medicine Centre, Leeds, UK.
Rachel ButlerAll Wales Genetics Laboratory, Cardiff, UK.
David Gonzalez de CastroGenomic Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University, Belfast, UK.
Mike GriffithsWest Midlands Regional Genetics Laboratory, Birmingham Women's NHS Foundation Trust, Birmingham, UK.
Peter W M JohnsonCancer Research UK, London, UK.
Beatson West of Scotland Cancer Centre · GBCancer Research Horizons · GBUniversity of Leeds · GBInstitute of Cancer Research · GBSalford Royal NHS Foundation Trust · GBUniversity of Manchester · GBEdinburgh Cancer Research · GBPapworth Hospital · GBQueen's University Belfast · GBUniversity Hospitals Birmingham NHS Foundation Trust · GBUniversity of St Andrews · GBVelindre NHS Trust · GBCancer Research UK · GBRoyal Brompton & Harefield NHS Foundation Trust · GBSt James's University Hospital · GBUniversity of Birmingham · GBUniversity of Cambridge · GB

Funding

Cancer Research UK 10589Cancer Research UK 19167Cancer Research UK 20409Chief Scientist Office ETM/285
6 · The paper itself

Abstract

introductionPhase I of the Cancer Research UK Stratified Medicine Programme (SMP1) was designed to roll out molecular pathology testing nationwide at the point of cancer diagnosis, as well as facilitate an infrastructure where surplus cancer tissue could be used for research. It offered a non-trial setting to examine common UK cancer genetics in a real-world context.

methodsA total of 26 sites in England, Wales and Scotland, recruited samples from 7814 patients for genetic examination between 2011 and 2013. Tumour types involved were breast, colorectal, lung, prostate, ovarian cancer and malignant melanoma. Centralised molecular testing of surplus material from resections or biopsies of primary/metastatic tissue was performed, with samples examined for 3-5 genetic alterations deemed to be of key interest in site-specific cancers by the National Cancer Research Institute Clinical Study groups.

results10 754 patients (98% of those approached) consented to participate, from which 7814 tumour samples were genetically analysed. In total, 53% had at least one genetic aberration detected. From 1885 patients with lung cancer,

conclusionNationwide molecular pathology testing in a non-trial setting is feasible. The experience with SMP1 has been used to inform ongoing CRUK flagship programmes such as the CRUK National Lung MATRIX trial and TRACERx.

Indexed as

cancercrukgeneticlungstratified medicine

Identifiers

PMID30233821
PMCPMC6135448
OpenAlexW2889302413

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.