Evidence map›Paper›PMID 30232127›Full record

ArticleJournal of clinical microbiology2018

Quantitation of Integrated HIV Provirus by Pulsed-Field Gel Electrophoresis and Droplet Digital PCR.

Steven M Lada, Karissa Huang, D Jake VanBelzen, Luis J Montaner, Una O'Doherty, Douglas D Richman

Open access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The reservoir of latent HIV.Frontiers in cellular and infection microbiology · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Measuring the Success of HIV-1 Cure Strategies.Frontiers in cellular and infection microbiology · 2020
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Steven M LadaSan Diego Center for AIDS Research, University of California San Diego, La Jolla, California, USA.
Karissa HuangSan Diego Center for AIDS Research, University of California San Diego, La Jolla, California, USA.
D Jake VanBelzenDepartment of Laboratory Medicine and Therapeutic Pathology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Luis J MontanerThe Wistar Institute, Philadelphia, Pennsylvania, USA.
Una O'DohertyDepartment of Laboratory Medicine and Therapeutic Pathology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Douglas D RichmanSan Diego Center for AIDS Research, University of California San Diego, La Jolla, California, USA drichman@ucsd.edu.ORCID 0000-0003-0962-9254
University of California San Diego · USUniversity of Pennsylvania · USThe Wistar Institute · US

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
BELIEVE: Bench to Bed Enhanced Lymphocyte Infusions to Engineer Viral EradicationUM1AI126617 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI JONES, R. BRAD, NIXON, DOUGLAS F · 2016 to 2020
$28.1M
First-in-human study of two anti-SARS CoV-2 antibodies in health volunteersUM1AI126620 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J, RILEY, JAMES L. · 2016 to 2021
$24.5M
Collaboratory of AIDS Researchers for Eradication (CARE)UM1AI126619 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MARGOLIS, DAVID M. · 2016 to 2020
$23.2M
Towards Eradication: Reducing Proviral HIV DNA with Interferon-α ImmunotherapyU01AI110434 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J · 2014 to 2017
$7.2M
DEVELOPMENT OF LIGANDS FOR NICOTINIC RECEPTORSR01DA012001 · NIDA · RESEARCH TRIANGLE INSTITUTE · PI CARROLL, FRANK IVY · 1999 to 2012
$4.8M
A FAST Assay to Quantify HIV ReservoirsR01AI120011 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI O'DOHERTY, UNA T, SAMBUCETTI, LIDIA C · 2015 to 2019
$3.1M
Targeting the Persistent HIV-1 Viral Reservoir Using Engineered T cellsR33AI104280 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI RILEY, JAMES L. · 2015 to 2017
$1.4M
A Micro-Co-Culture Assay for Single-Cell Analysis of HIV LatencyR33AI104283 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI LOONEY, DAVID JAMES · 2015 to 2017
$1.2M
Targeting the Persistent HIV-1 Viral Reservoir Using Engineered T cellsR21AI104280 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI RILEY, JAMES L. · 2013 to 2014
$437k
A Micro-Co-Culture Assay for Single-Cell Analysis of HIV LatencyR21AI104283 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI STRAIN, MATTHEW C · 2013 to 2014
$379k
NIAID NIH HHS P30 AI036214NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI120011NIAID NIH HHS R21 AI104280NIAID NIH HHS R21 AI104283NIAID NIH HHS R33 AI104280NIAID NIH HHS R33 AI104283NIAID NIH HHS U01 AI110434NIAID NIH HHS UM1 AI126617NIAID NIH HHS UM1 AI126619NIAID NIH HHS UM1 AI126620NIDA NIH HHS R01 DA012001
6 · The paper itself

Abstract

We utilized pulsed-field gel electrophoresis (PFGE) to purify high-molecular-weight DNA from HIV-infected cells. This purification, in combination with our previously described droplet digital PCR (ddPCR) assay, was used to develop a method to quantify proviral integrated HIV DNA free of lower-molecular-weight species of HIV DNA. Episomal 2-long-terminal-repeat (2-LTR) circles were completely cleared from HIV DNA samples. Technical replicates of the complete assay, starting with the same specimens, resulted in no statistical differences in quantification of integrated HIV

Indexed as

Electrophoresis, Gel, Pulsed-FieldReal-Time Polymerase Chain ReactionDNA, ViralGene Products, gagHIV-1HIV InfectionsHIV Long Terminal RepeatHumansLeukocytes, MononuclearProvirusesReproducibility of ResultsVirus IntegrationDNA, ViralGene Products, gagHIVintegrated DNAlatent reservoirpulsed-field gel electrophoresis

Identifiers

PMID30232127
PMCPMC6258838
OpenAlexW2890905156

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.