Evidence map›Paper›PMID 30229324›Full record

ArticleApplied microbiology and biotechnology2018

Structural and functional properties of antimicrobial protein L5 of Lysоbacter sp. XL1.

I V Kudryakova, A G Gabdulkhakov, S V Tishchenko, V Ya Lysanskaya, N E Suzina, I M Tsfasman, A S Afoshin, N V Vasilyeva

Abstract read
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In one paragraph

Article in Applied microbiology and biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The First Homologous Expression System for the β-Lytic Protease ofInternational journal of molecular sciences · 2022
    Article
  6. Deletion ofFrontiers in microbiology · 2021
    Article
  7. β-Lytic Protease ofAntibiotics (Basel, Switzerland) · 2020
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

I V KudryakovaG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, Pushchino, Moscow Region, Russia, 142290.
A G GabdulkhakovInstitute of Protein Research, Russian Academy of Sciences, 4 Institutskaya Str., Pushchino, Moscow Region, Russia, 142290.
S V TishchenkoInstitute of Protein Research, Russian Academy of Sciences, 4 Institutskaya Str., Pushchino, Moscow Region, Russia, 142290.
V Ya LysanskayaG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, Pushchino, Moscow Region, Russia, 142290.
N E SuzinaG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, Pushchino, Moscow Region, Russia, 142290.
I M TsfasmanG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, Pushchino, Moscow Region, Russia, 142290.
A S AfoshinG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, Pushchino, Moscow Region, Russia, 142290.
N V VasilyevaG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, Pushchino, Moscow Region, Russia, 142290. vasilyevanv@rambler.ru.ORCID http://orcid.org/0000-0003-3978-065X
G. K. Skryabin Institute of Biochemistry and Physiology of Microorganisms · RUInstitute of Protein Research · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Gram-negative bacterium Lysobacter sp. XL1 secretes into the extracellular space five bacteriolytic enzymes that lyse the cell walls of competing microorganisms. Of special interest are homologous lytic proteases L1 and L5. This work found protein L5 to possess Gly-Gly endopeptidase and N-acetylmuramoyl-L-Ala amidase activities with respect to staphylococcal peptidoglycan. Protein L5 was found to be capable of aggregating into amyloid-like fibril structures. The crystal structure of protein L5 was determined at a 1.60-Å resolution. Protein L5 was shown to have a rather high structural identity with bacteriolytic protease L1 of Lysobacter sp. XL1 and α-lytic protease of Lysobacter enzymogenes at a rather low identity of their amino acid sequences. Still, the structure of protein L5 was revealed to have regions that differed from their equivalents in the homologs. The revealed structural distinctions in L5 are suggested to be of importance in exhibiting its unique properties.

Indexed as

BacteriolysisAmino Acid SequenceBacterial ProteinsLysobacterMicroscopy, Electron, TransmissionPeptidoglycanProtein ConformationSerine EndopeptidasesStaphylococcus aureusX-Ray DiffractionBacterial Proteinsmyxobacter alpha-lytic proteinasePeptidoglycanSerine EndopeptidasesAntimicrobial proteinsBacteriolytic protease L5Crystal structure of protein L5Lysobacter sp. XL1PeptidoglycanSubstrate specificity

Identifiers

PMID30229324
OpenAlexW2889922833

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.