Evidence map›Paper›PMID 30228307›Full record

ArticleScientific reports2018

Proteome analysis reveals a role of rainbow trout lymphoid organs during Yersinia ruckeri infection process.

Gokhlesh Kumar, Karin Hummel, Katharina Noebauer, Timothy J Welch, Ebrahim Razzazi-Fazeli, Mansour El-Matbouli

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  7. Antigen Presentation and Autophagy in Teleost Adaptive Immunity.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Gokhlesh KumarClinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria. Gokhlesh.Kumar@vetmeduni.ac.at.ORCID 0000-0002-1958-2579
Karin HummelVetCore Facility for Research/Proteomics Unit, University of Veterinary Medicine, Vienna, Austria.
Katharina NoebauerVetCore Facility for Research/Proteomics Unit, University of Veterinary Medicine, Vienna, Austria.
Timothy J WelchNational Center for Cool and Cold Water Aquaculture, Kearneysville, USA.
Ebrahim Razzazi-FazeliVetCore Facility for Research/Proteomics Unit, University of Veterinary Medicine, Vienna, Austria.
Mansour El-MatbouliClinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria.
University of Veterinary Medicine Vienna · ATNational Center for Cool and Cold Water Aquaculture · US

Funding

Austrian Science Fund FWF P 27489
6 · The paper itself

Abstract

Yersinia ruckeri is the causative agent of enteric redmouth disease in salmonids. Head kidney and spleen are major lymphoid organs of the teleost fish where antigen presentation and immune defense against microbes take place. We investigated proteome alteration in head kidney and spleen of the rainbow trout following Y. ruckeri strains infection. Organs were analyzed after 3, 9 and 28 days post exposure with a shotgun proteomic approach. GO annotation and protein-protein interaction were predicted using bioinformatic tools. Thirty four proteins from head kidney and 85 proteins from spleen were found to be differentially expressed in rainbow trout during the Y. ruckeri infection process. These included lysosomal, antioxidant, metalloproteinase, cytoskeleton, tetraspanin, cathepsin B and c-type lectin receptor proteins. The findings of this study regarding the immune response at the protein level offer new insight into the systemic response to Y. ruckeri infection in rainbow trout. This proteomic data facilitate a better understanding of host-pathogen interactions and response of fish against Y. ruckeri biotype 1 and 2 strains. Protein-protein interaction analysis predicts carbon metabolism, ribosome and phagosome pathways in spleen of infected fish, which might be useful in understanding biological processes and further studies in the direction of pathways.

Indexed as

AnimalsFish DiseasesHead KidneyOncorhynchus mykissProteomeSpleenYersinia InfectionsYersinia ruckeriProteome

Identifiers

PMID30228307
PMCPMC6143608
OpenAlexW2890092380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.