Evidence map›Paper›PMID 30228258›Full record

ArticleNature communications2018

Alpha kinase 1 controls intestinal inflammation by suppressing the IL-12/Th1 axis.

Grigory Ryzhakov, Nathaniel R West, Fanny Franchini, Simon Clare, Nicholas E Ilott, Stephen N Sansom, Samuel J Bullers, Claire Pearson, Alice Costain, Alun Vaughan-Jackson and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 62 citations in OpenAlex.

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  17. Gain-of-function mutations inAnnals of the rheumatic diseases · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Grigory RyzhakovKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Nathaniel R WestKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Fanny FranchiniKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Simon ClareWellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Nicholas E IlottKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Stephen N SansomKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Samuel J BullersKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Claire PearsonKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Alice CostainKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Alun Vaughan-JacksonKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom.
Jeremy A GoettelBoston Children's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Joerg ErmannDepartment of Gastroenterology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0003-3836-9404
Bruce H HorwitzDepartment of Gastroenterology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Ludovico ButiLudwig Institute of Cancer Research, University of Oxford, Oxford, OX3 7DQ, United Kingdom.
Xin LuLudwig Institute of Cancer Research, University of Oxford, Oxford, OX3 7DQ, United Kingdom.ORCID http://orcid.org/0000-0002-6587-1152
Subhankar MukhopadhyayWellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Scott B SnapperBoston Children's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Fiona PowrieKennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY, United Kingdom. fiona.powrie@kennedy.ox.ac.uk.
University of Oxford · GBBoston Children's Hospital · USBrigham and Women's Hospital · USInstitute of Cancer Research · GBWellcome Sanger Institute · GBCancer Research Institute · US

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JONATHAN C KAGAN · 1986 to 2026
$32.4M
Investigating cross-regulation of the microbiome and mucosal immune system using humanized miceK01DK106311 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GOETTEL, JEREMY ALLEN · 2015 to 2019
$754k
Analyzing Disease Mechanisms in a Mouse Model of SpondyloarthritisR03AR066357 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI ERMANN, JOERG · 2014 to 2016
$236k
THE DESIGN OF ANTITUMOR REDUCTIVE ALKYLATORSR01CA036876 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI SKIBO, EDWARD B · 1985 to 1989
–
NIAMS NIH HHS R03 AR066357NIDDK NIH HHS K01 DK106311NIDDK NIH HHS P30 DK034854Wellcome Trust
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) are heterogenous disorders of the gastrointestinal tract caused by a spectrum of genetic and environmental factors. In mice, overlapping regions of chromosome 3 have been associated with susceptibility to IBD-like pathology, including a locus called Hiccs. However, the specific gene that controls disease susceptibility remains unknown. Here we identify a Hiccs locus gene, Alpk1 (encoding alpha kinase 1), as a potent regulator of intestinal inflammation. In response to infection with the commensal pathobiont Helicobacter hepaticus (Hh), Alpk1-deficient mice display exacerbated interleukin (IL)-12/IL-23 dependent colitis characterized by an enhanced Th1/interferon(IFN)-γ response. Alpk1 controls intestinal immunity via the hematopoietic system and is highly expressed by mononuclear phagocytes. In response to Hh, Alpk1

Indexed as

AnimalsBone Marrow CellsBone Marrow TransplantationColitisColonDisease Models, AnimalFemaleHelicobacter hepaticusHelicobacter InfectionsHumansInflammatory Bowel DiseasesInterleukin-12Interleukin-23MacrophagesMaleMiceALPK1 protein, mouseInterleukin-12Interleukin-23Protein Kinases

Identifiers

PMID30228258
PMCPMC6143560
OpenAlexW2890154569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.