Evidence map›Paper›PMID 30227597›Full record

ReviewViruses2018

Potato Spindle Tuber Viroid RNA-Templated Transcription: Factors and Regulation.

Shachinthaka D Dissanayaka Mudiyanselage, Jie Qu, Nancy Tian, Jian Jiang, Ying Wang

Abstract readReview
In one paragraph

Review in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Cellular roadmaps of viroid infection.Trends in microbiology · 2023
    Review
  8. Analysis of Hop Stunt Viroid Diversity in Grapevine (Pathogens (Basel, Switzerland) · 2023
    Article
  9. Frontiers in immunology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. The Influence ofPlants (Basel, Switzerland) · 2021
    Article
  18. Current view and perspectives in viroid replication.Current opinion in virology · 2021
    Review
  19. An Inside Look into Biological Miniatures: Molecular Mechanisms of Viroids.International journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shachinthaka D Dissanayaka MudiyanselageDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA. sdd292@msstate.edu.
Jie QuDepartment of Pathology and Laboratory Medicine, University of Cincinnati, Cincinnati, OH 45237, USA. quje@ucmail.uc.edu.
Nancy TianCollege of Medicine, Ohio State University, Columbus, OH 43210, USA. nancy.tian@osumc.edu.
Jian JiangDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA. jiang@biology.msstate.edu.
Ying WangDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA. wang@biology.msstate.edu.ORCID 0000-0002-9659-977X

Funding

National Science Foundation IOS-1564366
6 · The paper itself

Abstract

Viroids are circular noncoding RNAs that infect plants. Without encoding any protein, these noncoding RNAs contain the necessary genetic information for propagation in hosts. Nuclear-replicating viroids employ DNA-dependent RNA polymerase II (Pol II) for replication, a process that makes a DNA-dependent enzyme recognize RNA templates. Recently, a splicing variant of transcription factor IIIA (TFIIIA-7ZF) was identified as essential for Pol II to replicate potato spindle tuber viroid (PSTVd). The expression of TFIIIA-7ZF, particularly the splicing event, is regulated by a ribosomal protein (RPL5). PSTVd modulates its expression through a direct interaction with RPL5 resulting in optimized expression of TFIIIA-7ZF. This review summarizes the recent discoveries of host factors and regulatory mechanisms underlying PSTVd-templated transcription processes and raises new questions that may help future exploration in this direction. In addition, it briefly compares the machinery and the regulatory mechanism for PSTVd with the replication/transcription system of human hepatitis delta virus.

Indexed as

Gene Expression Regulation, ViralHost-Pathogen InteractionsRNA, ViralTranscription, GeneticNucleic Acid ConformationPlant DiseasesRibosomal ProteinsRNA SplicingSolanum tuberosumTranscription Factor TFIIIAViroidsVirus ReplicationRibosomal ProteinsRNA, ViralTranscription Factor TFIIIAalternative splicingHDAghepatitis delta virusPol IIRPL5TFIIIAviroid replication

Identifiers

PMID30227597
PMCPMC6164485

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.