Evidence map›Paper›PMID 30226839›Full record

ArticlePLoS genetics2018

Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes.

Jessica E Spiewak, Emily J Bain, Jin Liu, Kellie Kou, Samantha L Sturiale, Larissa B Patterson, Parham Diba, Judith S Eisen, Ingo Braasch, Julia Ganz and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
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  17. The application of genome editing technology in fish.Marine life science & technology · 2021
    Review
  18. Article
  19. Thyroid hormones regulate the formation and environmental plasticity of white bars in clownfishes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Jessica E SpiewakDepartment of Biology, University of Washington, Seattle, WA, United States of America.
Emily J BainDepartment of Biology, University of Washington, Seattle, WA, United States of America.ORCID 0000-0003-0428-4357
Jin LiuDepartment of Biology and Department of Cell Biology, University of Virginia, Charlottesville, VA, United States of America.
Kellie KouDepartment of Biology, University of Washington, Seattle, WA, United States of America.ORCID 0000-0001-6641-3973
Samantha L SturialeDepartment of Biology and Department of Cell Biology, University of Virginia, Charlottesville, VA, United States of America.ORCID 0000-0002-6825-4133
Larissa B PattersonDepartment of Biology, University of Washington, Seattle, WA, United States of America.
Parham DibaInstitute of Neuroscience, University of Oregon, Eugene, OR, United States of America.ORCID 0000-0003-1014-510X
Judith S EisenInstitute of Neuroscience, University of Oregon, Eugene, OR, United States of America.ORCID 0000-0003-1229-1696
Ingo BraaschDepartment of Integrative Biology, Michigan State University, East Lansing, MI, United States of America.
Julia GanzDepartment of Integrative Biology, Michigan State University, East Lansing, MI, United States of America.
David M ParichyDepartment of Biology and Department of Cell Biology, University of Virginia, Charlottesville, VA, United States of America.ORCID 0000-0003-2771-6095
University of Washington · USUniversity of Virginia · USMichigan State University · USUniversity of Oregon · US

Funding

Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 1987 to 2017
$28.8M
Fish facility enhancementR35GM122471 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVID M PARICHY · 2017 to 2026
$6.4M
Resources for Teleost Gene Duplicates and Human DiseaseR01OD011116 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2012 to 2020
$5.4M
Melanocyte boundary interactions in development and neoplasiaR01GM096906 · NIGMS · UNIVERSITY OF WASHINGTON · PI PARICHY, DAVID M · 2011 to 2016
$2.2M
NICHD R25 Summer Research Program at the University of OregonR25HD070817 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 2011 to 2021
$1.1M
NICHD NIH HHS P01 HD022486NICHD NIH HHS R25 HD070817NIGMS NIH HHS R01 GM096906NIGMS NIH HHS R35 GM122471NIH HHS R01 OD011116
6 · The paper itself

Abstract

Fishes of the genus Danio exhibit diverse pigment patterns that serve as useful models for understanding the genes and cell behaviors underlying the evolution of adult form. Among these species, zebrafish D. rerio exhibit several dark stripes of melanophores with sparse iridophores that alternate with light interstripes of dense iridophores and xanthophores. By contrast, the closely related species D. nigrofasciatus has an attenuated pattern with fewer melanophores, stripes and interstripes. Here we demonstrate species differences in iridophore development that presage the fully formed patterns. Using genetic and transgenic approaches we identify the secreted peptide Endothelin-3 (Edn3)-a known melanogenic factor of tetrapods-as contributing to reduced iridophore proliferation and fewer stripes and interstripes in D. nigrofasciatus. We further show the locus encoding this factor is expressed at lower levels in D. nigrofasciatus owing to cis-regulatory differences between species. Finally, we show that functions of two paralogous loci encoding Edn3 have been partitioned between skin and non-skin iridophores. Our findings reveal genetic and cellular mechanisms contributing to pattern differences between these species and suggest a model for evolutionary changes in Edn3 requirements for pigment patterning and its diversification across vertebrates.

Indexed as

AnimalsAnimals, Genetically ModifiedCell ProliferationChromatophoresEmbryo, NonmammalianEndothelin-3Evolution, MolecularGene Expression Regulation, DevelopmentalModels, AnimalPhenotypePigmentationSignal TransductionSkinSpecies SpecificityZebrafishZebrafish ProteinsEndothelin-3Zebrafish Proteins

Identifiers

PMID30226839
PMCPMC6161917
OpenAlexW2950266515

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.