Evidence map›Paper›PMID 30225643›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018

The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin.

Mahsa Mousavi-Derazmahalleh, Bruno Nevado, Philipp E Bayer, Dmitry A Filatov, James K Hane, David Edwards, William Erskine, Matthew N Nelson

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Genome-wide association study reveals white lupin candidate gene involved in anthracnose resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
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  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mahsa Mousavi-DerazmahallehUWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia. mahsa.mousaviderazmahalleh@research.uwa.edu.au.ORCID http://orcid.org/0000-0002-2299-2050
Bruno NevadoDepartment of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK.
Philipp E BayerSchool of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Dmitry A FilatovDepartment of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK.
James K HaneCCDM Bioinformatics, Centre for Crop and Disease Management, Curtin University, Bentley, WA, 6102, Australia.
David EdwardsSchool of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
William ErskineUWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Matthew N NelsonUWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia. M.Nelson@kew.org.

Funding

Grain Research and Development Corporation UWA00151
6 · The paper itself

Abstract

key messageThis study revealed that the western Mediterranean provided the founder population for domesticated narrow-leafed lupin and that genetic diversity decreased significantly during narrow-leafed lupin domestication. The evolutionary history of plants during domestication profoundly shaped the genome structure and genetic diversity of today's crops. Advances in next-generation sequencing technologies allow unprecedented opportunities to understand genome evolution in minor crops, which constitute the majority of plant domestications. A diverse set of 231 wild and domesticated narrow-leafed lupin (Lupinus angustifolius L.) accessions were subjected to genotyping-by-sequencing using diversity arrays technology. Phylogenetic, genome-wide divergence and linkage disequilibrium analyses were applied to identify the founder population of domesticated narrow-leafed lupin and the genome-wide effect of domestication on its genome. We found wild western Mediterranean population as the founder of domesticated narrow-leafed lupin. Domestication was associated with an almost threefold reduction in genome diversity in domesticated accessions compared to their wild relatives. Selective sweep analysis identified no significant footprints of selection around domestication loci. A genome-wide association study identified single nucleotide polymorphism markers associated with pod dehiscence. This new understanding of the genomic consequences of narrow-leafed lupin domestication along with molecular marker tools developed here will assist plant breeders more effectively access wild genetic diversity for crop improvement.

Indexed as

Biological EvolutionGenetics, PopulationGenetic VariationGenome, PlantCrops, AgriculturalDomesticationLinkage DisequilibriumLupinusMediterranean RegionPhenotypePhylogenyPolymorphism, Single NucleotideSelection, Genetic

Identifiers

PMID30225643
PMCPMC6244526

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.