Evidence map›Paper›PMID 30225519›Full record

ArticleArchives of virology2019

The fecal virome of red-crowned cranes.

Yan Wang, Shixing Yang, Dawei Liu, Chenglin Zhou, Wang Li, Yuan Lin, Xiaochun Wang, Quan Shen, Hua Wang, Chuang Li and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Archives of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
12.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 115 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Yan WangSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Shixing YangSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Dawei LiuCollege of Biology and the Environment, Nanjing Forestry Police College, Nanjing, 210023, Jiangsu, People's Republic of China.
Chenglin ZhouDepartment of Medical Laboratory Testing, Jiangsu Taizhou People's Hospital, Taizhou, 225300, Jiangsu, People's Republic of China.
Wang LiDepartment of Medical Laboratory Testing, Jiangsu Taizhou People's Hospital, Taizhou, 225300, Jiangsu, People's Republic of China.
Yuan LinSchool of Basic Medical Sciences, Ningxia Medical University, Yinchuan, 750021, Gansu, People's Republic of China.
Xiaochun WangSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Quan ShenSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Hua WangSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Chuang LiSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Minghui ZongSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Yuzhu DingSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Qianben SongSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.
Xutao DengBlood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.
Dunwu QiSichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu Research Base of Giant Panda Breeding, Chengdu, 610000, Sichuan, People's Republic of China.
Wen ZhangSchool of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China. z0216wen@yahoo.com.
Eric DelwartBlood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.
Jiangsu University · CNUniversity of California, San Francisco · USChengdu Research Base of Giant Panda Breeding · CNNanjing Forest Police College · CNNantong University · CNNingxia Medical University · CNTaizhou People's Hospital · CN

Funding

Jiangsu Provincial Key Research and Development Projects No. BE2017693National Key Research and Development Programs of China No. 2017YFC1200201National Natural Science Foundation of China No. 81741062Postdoctoral Research Foundation of China No. 2014M561597the Postdoctoral Foundation of Jiangsu Province No. 1302057Cthe Postdoctoral Foundation of Jiangsu Province No. 1302058Cthe Professional Research Foundation for Advanced Talents of Jiangsu University No. 12JDG085the Professional Research Foundation for Advanced Talents of Jiangsu University No. 13JDG087
6 · The paper itself

Abstract

The red-crowned crane is one of the rarest crane species, and its population is decreasing due to loss of habitat, poisoning, and infections. Using a viral metagenomics approach, we analyzed the virome of feces from wild and captive red-crowned cranes, which were pooled separately. Vertebrate viruses belonging to the families Picornaviridae, Parvoviridae, Circoviridae, and Caliciviridae were detected. Among the members of the family Picornaviridae, we found three that appear to represent new genera. Six nearly complete genomes from members of the family Parvoviridae were also obtained, including four new members of the proposed genus "Chapparvovirus", and two members of the genus Aveparvovirus. Six small circular DNA genomes were also characterized. One nearly complete genome showing a low level of sequence identity to caliciviruses was also characterized. Numerous viruses believed to infect insects, plants, and crustaceans were also identified, which were probably derived from the diet of red-crowned cranes. This study increases our understanding of the enteric virome of red-crowned cranes and provides a baseline for comparison to those of other birds or following disease outbreaks.

Indexed as

AnimalsBirdsFecesGenome, ViralMetagenomePhylogenyPolymerase Chain ReactionViruses

Identifiers

PMID30225519
PMCPMC7086969
OpenAlexW2891873770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.