Evidence map›Paper›PMID 30224965›Full record

ArticleIUCrJ2018

Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome.

Nicole C Woitowich, Andrei S Halavaty, Patricia Waltz, Christopher Kupitz, Joseph Valera, Gregory Tracy, Kevin D Gallagher, Elin Claesson, Takanori Nakane, Suraj Pandey and 31 more

Open access · goldAbstract read
In one paragraph

Article in IUCrJ, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Structures of Myxobacterial Phytochrome Revealed by Cryo-EM.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  4. Milestones in the development ofJournal of bacteriology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Photomorphogenesis of Myxococcus macrosporus: new insights for light-regulation of cell development.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  19. Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  20. Protein-chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 12 institutions in 4 countries.

Nicole C WoitowichDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Andrei S HalavatyDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Patricia WaltzDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Christopher KupitzDepartment of Physics, University of Wisconsin, Milwaukee, WI, USA.
Joseph ValeraDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Gregory TracyDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Kevin D GallagherDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Elin ClaessonDepartment of Chemistry and Molecular Biology, University of Gothenburg, 40530 Gothenburg, Sweden.
Takanori NakaneDepartment of Biological Sciences, Graduate School of Science, University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo, 113-0032, Japan.ORCID https://orcid.org/0000-0003-2697-2767
Suraj PandeyDepartment of Physics, University of Wisconsin, Milwaukee, WI, USA.
Garrett NelsonCenter for Applied Structural Discovery, Arizona State University, 85287 Tempe, AZ, USA.ORCID https://orcid.org/0000-0003-4008-8257
Rie TanakaRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, 679-5148 Hyogo, Japan.ORCID https://orcid.org/0000-0003-1062-4792
Eriko NangoRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, 679-5148 Hyogo, Japan.ORCID https://orcid.org/0000-0001-9851-7355
Eiichi MizohataDepartment of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.ORCID https://orcid.org/0000-0002-5526-5343
Shigeki OwadaRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, 679-5148 Hyogo, Japan.ORCID https://orcid.org/0000-0002-1451-7612
Kensure TonoRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, 679-5148 Hyogo, Japan.ORCID https://orcid.org/0000-0003-1218-3759
Yasumasa JotiRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, 679-5148 Hyogo, Japan.ORCID https://orcid.org/0000-0002-4040-5972
Angela C NugentDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Hardik PatelDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.ORCID https://orcid.org/0000-0002-9999-9605
Ayesha MaparaDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
James HopkinsDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.ORCID https://orcid.org/0000-0003-3552-2629
Phu DuongDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Dorina BizhgaDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Svetlana E KovalevaDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.ORCID https://orcid.org/0000-0001-8878-9189
Rachael St PeterDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.ORCID https://orcid.org/0000-0002-3379-9352
Cynthia N HernandezDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Wesley B OzarowskiDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Shatabdi Roy-ChowdhuriCenter for Applied Structural Discovery, Arizona State University, 85287 Tempe, AZ, USA.
Jay-How YangCenter for Applied Structural Discovery, Arizona State University, 85287 Tempe, AZ, USA.
Petra EdlundDepartment of Chemistry and Molecular Biology, University of Gothenburg, 40530 Gothenburg, Sweden.ORCID https://orcid.org/0000-0002-5746-8857
Heikki TakalaFaculty of Medicine, Anatomy, University of Helsinki, 00014 Helsinki, Finland.ORCID https://orcid.org/0000-0003-2518-8583
Janne IhalainenNanoscience Center, Department of Biological and Environmental Sciences, University of Jyvaskyla, 40014 Jyvaskyla, Finland.ORCID https://orcid.org/0000-0002-8741-1587
Jennifer BrayshawDepartment of Physics, University of Wisconsin, Milwaukee, WI, USA.
Tyler NorwoodDepartment of Physics, University of Wisconsin, Milwaukee, WI, USA.
Ishwor PoudyalDepartment of Physics, University of Wisconsin, Milwaukee, WI, USA.
Petra FrommeCenter for Applied Structural Discovery, Arizona State University, 85287 Tempe, AZ, USA.
John C H SpenceCenter for Applied Structural Discovery, Arizona State University, 85287 Tempe, AZ, USA.ORCID https://orcid.org/0000-0001-6049-3925
Keith MoffatDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA.ORCID https://orcid.org/0000-0002-7417-9264
Sebastian WestenhoffDepartment of Chemistry and Molecular Biology, University of Gothenburg, 40530 Gothenburg, Sweden.ORCID https://orcid.org/0000-0002-6961-8015
Marius SchmidtDepartment of Physics, University of Wisconsin, Milwaukee, WI, USA.ORCID https://orcid.org/0000-0002-0962-9468
Emina A StojkovićDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Northeastern Illinois University · USUniversity of Wisconsin–Milwaukee · USArizona State University · USSPring-8 · JPUniversity of Gothenburg · SEKyoto University · JPNorthwestern University · USThe University of Osaka · JPThe University of Tokyo · JPUniversity of Chicago · USUniversity of Helsinki · FIUniversity of Jyväskylä · FI

Funding

Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
Structures, Dynamics and Signaling Mechanisms of Modular PhotoreceptorsR01EY024363 · NEI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI YANG, XIAOJING · 2014 to 2021
$2.9M
NU-STARS for Northeastern Illinois Student Training in Academic Research in the SciencesT34GM105549 · NIGMS · NORTHEASTERN ILLINOIS UNIVERSITY · PI CHURCH, RUTH B, HIBDON, JOSEPH EDWARD · 2014 to 2023
$2.8M
European Research Council 279944NEI NIH HHS R01 EY024363NIGMS NIH HHS R01 GM095583NIGMS NIH HHS T34 GM105549
6 · The paper itself

Abstract

Phytochromes are red-light photoreceptors that were first characterized in plants, with homologs in photosynthetic and non-photosynthetic bacteria known as bacteriophytochromes (BphPs). Upon absorption of light, BphPs interconvert between two states denoted Pr and Pfr with distinct absorption spectra in the red and far-red. They have recently been engineered as enzymatic photoswitches for fluorescent-marker applications in non-invasive tissue imaging of mammals. This article presents cryo- and room-temperature crystal structures of the unusual phytochrome from the non-photosynthetic myxo-bacterium

Indexed as

absorption spectramyxobacteriaphotoreceptorsphotosynthetic bacteriaphytochromes

Identifiers

PMID30224965
PMCPMC6126659
OpenAlexW2889104223

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.