Evidence map›Paper›PMID 30224695›Full record

ArticleNature chemical biology2018

T cell receptor cross-reactivity expanded by dramatic peptide-MHC adaptability.

Timothy P Riley, Lance M Hellman, Marvin H Gee, Juan L Mendoza, Jesus A Alonso, Kendra C Foley, Michael I Nishimura, Craig W Vander Kooi, K Christopher Garcia, Brian M Baker

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. CD8 co-receptor modulates the specificity profile of the 1G4 TCR against NY-ESO-1.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Article
  6. Review
  7. Article
  8. T cell receptor specificity landscape revealed through de novo peptide design.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Identification of novel KRASJournal of translational medicine · 2025
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Timothy P RileyDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, USA.
Lance M HellmanDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, USA.
Marvin H GeeDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA.
Juan L MendozaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA.
Jesus A AlonsoDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA.
Kendra C FoleyDepartment of Surgery, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, IL, USA.
Michael I NishimuraDepartment of Surgery, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, IL, USA.
Craig W Vander KooiDepartment of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY, USA.
K Christopher GarciaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA.
Brian M BakerDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, USA. brian-baker@nd.edu.ORCID http://orcid.org/0000-0002-0864-0964
Stanford University · USUniversity of Notre Dame · USLoyola University Chicago · USUniversity of Kentucky · US

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
TCR TRANSDUCED CDB T CELLS FOR ADOPTIVE IMMUNOTHERAPYP01CA154778 · NCI · LOYOLA UNIVERSITY CHICAGO · PI NISHIMURA, MICHAEL I. · 2011 to 2015
$15.4M
Structural correlates of T cell receptor signalingR01AI103867 · NIAID · STANFORD UNIVERSITY · PI Kenan Christopher GARCIA · 2014 to 2026
$5.3M
Structural biophysics and molecular design in cellular immunityR35GM118166 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2016 to 2025
$4.4M
Building better T cell receptors for targeted immunotherapyR01AI129543 · NIAID · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M, NISHIMURA, MICHAEL I. · 2017 to 2021
$3.8M
Indiana Clinical and Translational Sciences InstituteTL1TR001107 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$2.0M
Diversifying interferon functions through combinatorial and structural biologyK01CA175127 · NCI · STANFORD UNIVERSITY · PI MENDOZA, JUAN LUIS · 2013 to 2017
$584k
TCR Engineering of Quiescent Primary Human T CellsR21CA153789 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI NISHIMURA, MICHAEL I. · 2010 to 2011
$348k
Probing T cell phenotypes and receptor specificities in cancer immunotherapyF31CA216926 · NCI · STANFORD UNIVERSITY · PI GEE, MARVIN HO-YAN · 2017 to 2017
$26k
NCATS NIH HHS TL1 TR001107NCATS NIH HHS UL1 TR001108NCI NIH HHS F31 CA216926NCI NIH HHS K01 CA175127NCI NIH HHS P01 CA154778NCI NIH HHS R21 CA153789NIAID NIH HHS R01 AI103867NIAID NIH HHS R01 AI129543NIAID NIH HHS T32 AI007290NIGMS NIH HHS R35 GM118166
6 · The paper itself

Abstract

T cell receptor cross-reactivity allows a fixed T cell repertoire to respond to a much larger universe of potential antigens. Recent work has emphasized the importance of peptide structural and chemical homology, as opposed to sequence similarity, in T cell receptor cross-reactivity. Surprisingly, though, T cell receptors can also cross-react between ligands with little physiochemical commonalities. Studying the clinically relevant receptor DMF5, we demonstrate that cross-recognition of such divergent antigens can occur through mechanisms that involve heretofore unanticipated rearrangements in the peptide and presenting MHC protein, including binding-induced peptide register shifts and extensions from MHC peptide binding grooves. Moreover, cross-reactivity can proceed even when such dramatic rearrangements do not translate into structural or chemical molecular mimicry. Beyond demonstrating new principles of T cell receptor cross-reactivity, our results have implications for efforts to predict and control T cell specificity and cross-reactivity and highlight challenges associated with predicting T cell reactivities.

Indexed as

AntigensAutoimmunityCross ReactionsCrystallography, X-RayEpitopesHumansKineticsLigandsMolecular MimicryOligopeptidesProtein BindingProtein DomainsReceptors, Antigen, T-CellRetroviridaeSurface Plasmon ResonanceT-LymphocytesAntigensEpitopesLigandsMHC binding peptideOligopeptidesReceptors, Antigen, T-Cell

Identifiers

PMID30224695
PMCPMC6371774
OpenAlexW2889980427

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.