Evidence map›Paper›PMID 30224645›Full record

ArticleNature genetics2018

Genomic history of the Sardinian population.

Charleston W K Chiang, Joseph H Marcus, Carlo Sidore, Arjun Biddanda, Hussein Al-Asadi, Magdalena Zoledziewska, Maristella Pitzalis, Fabio Busonero, Andrea Maschio, Giorgio Pistis and 7 more

Abstract readHistorical Article
In one paragraph

Article in Nature genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Charleston W K ChiangCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA. charleston.chiang@med.usc.edu.ORCID http://orcid.org/0000-0002-0668-7865
Joseph H MarcusDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-0923-9881
Carlo SidoreIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.
Arjun BiddandaDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-1861-1523
Hussein Al-AsadiCommittee on Evolutionary Biology, University of Chicago, Chicago, IL, USA.
Magdalena ZoledziewskaIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.
Maristella PitzalisIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.
Fabio BusoneroIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.
Andrea MaschioIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.ORCID http://orcid.org/0000-0002-4238-9144
Giorgio PistisIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.
Maristella SteriIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.ORCID http://orcid.org/0000-0001-5869-3872
Andrea AngiusIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.
Kirk E LohmuellerDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA.
Goncalo R AbecasisCenter for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.
David SchlessingerLaboratory of Genetics, National Institute on Aging, US National Institutes of Health, Baltimore, MD, USA.
Francesco CuccaIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Monserrato, Cagliari, Italy.ORCID http://orcid.org/0000-0002-7414-1995
John NovembreDepartment of Human Genetics, University of Chicago, Chicago, IL, USA. jnovembre@uchicago.edu.

Funding

PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
Studies of Rare Genetic Variation in the Isolated Population of SardiniaU01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2017 to 2018
$6.3M
Training Grant in Neurobehavioral GeneticsT32NS048004 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BEARDEN, CARRIE E, OPHOFF, ROEL A · 2004 to 2025
$5.8M
Aging-related Traits and Disease Risk Factors in a Sardinian Population CohortZIAAG000675 · NIA · NATIONAL INSTITUTE ON AGING · PI GOROSPE, MYRIAM · 2009 to 2021
$5.7M
Robust Software Tools for Variant Identification and Functional AssessmentU01HG006513 · NHGRI · UNIVERSITY OF UTAH · PI ABECASIS, GONCALO, MARTH, GABOR T · 2012 to 2015
$4.2M
Genetics of Lipid Levels: Draft Sequencing of 1000 GenomesRC2HG005581 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2009 to 2010
$4.0M
Computational and statistical models for human geneticsR01HG007022 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2012 to 2016
$3.0M
Modular Software for Sequence Data Quality Checking Alignment & Variant-CallingRC2HG005552 · NHGRI · BOSTON COLLEGE · PI ABECASIS, GONCALO, MARTH, GABOR T · 2009 to 2012
$2.4M
Population Genetic Consequences of Recent Explosive Population Growth in HumansR01GM108805 · NIGMS · CORNELL UNIVERSITY · PI CLARK, ANDREW G, KEINAN, ALON · 2014 to 2017
$2.2M
Haplotype-based analysis methods for population genomicsR01HG007089 · NHGRI · UNIVERSITY OF CHICAGO · PI NOVEMBRE, JOHN · 2013 to 2017
$1.5M
Using whole genomes to study demography and mapping power of a population isolateF32GM106656 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHIANG, CHARLESTON · 2013 to 2014
$107k
NHGRI NIH HHS R01 HG007022NHGRI NIH HHS R01 HG007089NHGRI NIH HHS RC2 HG005552NHGRI NIH HHS RC2 HG005581NHGRI NIH HHS U01 HG006513NHLBI NIH HHS R01 HL117626NHLBI NIH HHS U01 HL117626NIA NIH HHS N01 AG012109NIDA NIH HHS HHSN271201100005CNIGMS NIH HHS F32 GM106656NIGMS NIH HHS R01 GM108805NIGMS NIH HHS T32 GM007197NINDS NIH HHS T32 NS048004
6 · The paper itself

Abstract

The population of the Mediterranean island of Sardinia has made important contributions to genome-wide association studies of complex disease traits and, based on ancient DNA studies of mainland Europe, Sardinia is hypothesized to be a unique refuge for early Neolithic ancestry. To provide new insights on the genetic history of this flagship population, we analyzed 3,514 whole-genome sequenced individuals from Sardinia. Sardinian samples show elevated levels of shared ancestry with Basque individuals, especially samples from the more historically isolated regions of Sardinia. Our analysis also uniquely illuminates how levels of genetic similarity with mainland ancient DNA samples varies subtly across the island. Together, our results indicate that within-island substructure and sex-biased processes have substantially impacted the genetic history of Sardinia. These results give new insight into the demography of ancestral Sardinians and help further the understanding of sharing of disease risk alleles between Sardinia and mainland populations.

Indexed as

Genetics, PopulationGenetic VariationPhylogenyCase-Control StudiesDemographyFemaleGene FrequencyGenome-Wide Association StudyHistory, AncientHuman MigrationHumansItalyLongitudinal StudiesMaleMediterranean Region

Identifiers

PMID30224645
PMCPMC6168346

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.