Evidence map›Paper›PMID 30224453›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Structural basis for activation of SAGA histone acetyltransferase Gcn5 by partner subunit Ada2.

Jian Sun, Marcin Paduch, Sang-Ah Kim, Ryan M Kramer, Adam F Barrios, Vincent Lu, Judy Luke, Svitlana Usatyuk, Anthony A Kossiakoff, Song Tan

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jian SunCenter for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802.
Marcin PaduchDepartment of Biochemistry and Molecular Biology, The University of Chicago, IL 60637.
Sang-Ah KimCenter for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802.
Ryan M KramerCenter for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802.
Adam F BarriosCenter for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802.
Vincent LuDepartment of Biochemistry and Molecular Biology, The University of Chicago, IL 60637.
Judy LukeDepartment of Biochemistry and Molecular Biology, The University of Chicago, IL 60637.
Svitlana UsatyukDepartment of Biochemistry and Molecular Biology, The University of Chicago, IL 60637.
Anthony A KossiakoffDepartment of Biochemistry and Molecular Biology, The University of Chicago, IL 60637.
Song TanCenter for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802; sxt30@psu.edu.
Pennsylvania State University · USUniversity of Chicago · US

Funding

Recombinant Antibody NetworkU54HG006436 · NHGRI · UNIVERSITY OF CHICAGO · PI KOSSIAKOFF, ANTHONY A · 2011 to 2014
$8.2M
Foreign - Univ. of Toronto, PI-Dr. Sachdev SidhuU01GM094588 · NIGMS · UNIVERSITY OF CHICAGO · PI KOSSIAKOFF, ANTHONY A · 2010 to 2014
$6.8M
Chaperone-Assisted Structure Determination of Membrane ProteinsR01GM117372 · NIGMS · UNIVERSITY OF CHICAGO · PI ANTHONY A KOSSIAKOFF · 2016 to 2026
$4.0M
Chaperone Assisted CrystallographyR01GM072688 · NIGMS · UNIVERSITY OF CHICAGO · PI KOSSIAKOFF, ANTHONY A · 2005 to 2012
$2.7M
Structural Basis for RCC1 Directed Recruitment of Ran GTPase to ChromatinR01GM088236 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI TAN, SONG · 2009 to 2017
$2.5M
Molecular interactions of histone ubiquitylation enzymes with the nucleosomeR01GM111651 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI TAN, SONG · 2014 to 2017
$1.1M
NHGRI NIH HHS U54 HG006436NIGMS NIH HHS R01 GM072688NIGMS NIH HHS R01 GM088236NIGMS NIH HHS R01 GM111651NIGMS NIH HHS R01 GM117372NIGMS NIH HHS U01 GM094588
6 · The paper itself

Abstract

The Gcn5 histone acetyltransferase (HAT) subunit of the SAGA transcriptional coactivator complex catalyzes acetylation of histone H3 and H2B N-terminal tails, posttranslational modifications associated with gene activation. Binding of the SAGA subunit partner Ada2 to Gcn5 activates Gcn5's intrinsically weak HAT activity on histone proteins, but the mechanism for this activation by the Ada2 SANT domain has remained elusive. We have employed Fab antibody fragments as crystallization chaperones to determine crystal structures of a yeast Ada2/Gcn5 complex. Our structural and biochemical results indicate that the Ada2 SANT domain does not activate Gcn5's activity by directly affecting histone peptide binding as previously proposed. Instead, the Ada2 SANT domain enhances Gcn5 binding of the enzymatic cosubstrate acetyl-CoA. This finding suggests a mechanism for regulating chromatin modification enzyme activity: controlling binding of the modification cosubstrate instead of the histone substrate.

Indexed as

Acetyl Coenzyme ACrystallography, X-RayEnzyme ActivationHistone AcetyltransferasesHistonesp300-CBP-Associated FactorProtein BindingProtein DomainsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsAcetyl Coenzyme AADA2 protein, S cerevisiaeGCN5 protein, S cerevisiaeHistone AcetyltransferasesHistonesp300-CBP-Associated FactorSaccharomyces cerevisiae ProteinsTranscription Factorschromatin biologyepigeneticshistone modificationX-ray crystallography

Identifiers

PMID30224453
PMCPMC6176591
OpenAlexW2891908571

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.