Evidence map›Paper›PMID 30223781›Full record

ArticleBMC medical genetics2018

Correlation between CTLA-4 and CD40 gene polymorphisms and their interaction in graves' disease in a Chinese Han population.

Xiaoming Chen, Zhuoqing Hu, Meilian Liu, Huaqian Li, Chanbo Liang, Wei Li, Liwen Bao, Manyang Chen, Ge Wu

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaoming ChenDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Zhuoqing HuDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Meilian LiuDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Huaqian LiDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Chanbo LiangDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Wei LiDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Liwen BaoDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Manyang ChenDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China.
Ge WuDepartment of Endocrinology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, China. wuge427427@126.com.ORCID 0000-0002-8096-5851
Guangdong Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSingle-nucleotide polymorphism (SNP) haplotype and SNP-SNP interactions of CTLA-4 and CD40 genes, with susceptibility to Graves' disease (GD), were explored in a Chinese Han population.

methodsSNP were genotyped by high resolution melting (HRM). Use the method of Pearson χ2 test and Logistic regression for the association between single SNP and Graves' disease. Using the method of χ2 test and Multifactor Dimensionality Reduction (MDR) to analysis the haplotype frequency distribution, the interaction of SNPs respectively.

resultsGenotypic and allelic frequencies of SNP rs231775, rs3087243 and rs1883832 were statistically different between controls and GD (p < 0.05). Mutant allelic frequency of G rs231775 was higher, and A and T allelic frequencies of rs3087243 and rs1883832 were lower in GD than in controls (P < 0.05). In CTLA-4 rs1024161, rs5742909, rs231775, rs231777, rs231779, rs3087243 and rs11571319 showed D' < 50% and r

conclusionCTLA-4 and CD40 were associated with GD incidence in a Chinese Han population. The TCGCTGC and TCACTAC haplotypes in the CTLA-4 gene, were risk and protective factors for Graves'disease respectively. Interactions among the SNPs of rs231775, rs231779 and rs3087243 significantly increase the susceptibility to GD.

Indexed as

Epistasis, GeneticGenetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAllelesAsian PeopleCase-Control StudiesCD40 AntigensCTLA-4 AntigenFemaleGene ExpressionGene FrequencyGraves DiseaseHaplotypesHumansLogistic ModelsCD40 AntigensCTLA-4 AntigenCTLA4 protein, humanCD40CTLA-4Genetic polymorphismGraves’ disease

Identifiers

PMID30223781
PMCPMC6142355
OpenAlexW2891236135

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.