ArticleBMC plant biology2018
ChIP-Seq reveals that QsMYB1 directly targets genes involved in lignin and suberin biosynthesis pathways in cork oak (Quercus suber).
Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed, 63 citations in OpenAlex.
- Differences in lignification between hulled and hull-less Cucurbita pepo and functional identification of the key regulatory factor CpMYB52.Plant cell reports · 2026Article
- The Structure, Classification, Functional Diversity and Regulatory Mechanism of Plant C2H2 Transcription Factors.Biology · 2026Review
- Regulatory Roles of MYB Transcription Factors in Root Barrier Under Abiotic Stress.Plants (Basel, Switzerland) · 2026Review
- Transcription factors SlMYB41, SlMYB92, and SlWRKY71 regulate gene expression in the tomato exodermis.Journal of experimental botany · 2025Article
- Sustainable Cyanobacterial Bloom Control: Inhibitory Effects of Nano Zero-Valent Iron onToxics · 2025Article
- Rhytidome- and cork-type barks of holm oak, cork oak and their hybrids highlight processes leading to cork formation.BMC plant biology · 2024Article
- PAT (Periderm Assessment Toolkit): A Quantitative and Large-Scale Screening Method for Periderm Measurements.Plant phenomics (Washington, D.C.) · 2024Article
- The D165H Polymorphism of QiMYB-like-1 Is Linked to Interactions between Tannin Accumulation, Herbivory and Biogeographical Determinants ofInternational journal of molecular sciences · 2022Article
- Transcriptional networks regulating suberin and lignin in endodermis link development and ABA response.Plant physiology · 2022Article
- Suberin Biosynthesis, Assembly, and Regulation.Plants (Basel, Switzerland) · 2022Review
- The Key Enzymes in the Suberin Biosynthetic Pathway in Plants: An Update.Plants (Basel, Switzerland) · 2022Review
- Transcriptional regulation of KCS gene by bZIP29 and MYB70 transcription factors during ABA-stimulated wound suberization of kiwifruit (Actinidia deliciosa).BMC plant biology · 2022Article
- Sodium silicate promotes wound healing by inducing the deposition of suberin polyphenolic and lignin in potato tubers.Frontiers in plant science · 2022Article
- Solving the regulation puzzle of periderm development using advances in fruit skin.Frontiers in plant science · 2022Review
- Convergent evolution of gene regulatory networks underlying plant adaptations to dry environments.Plant, cell & environment · 2021Review
- Importance of suberin biopolymer in plant function, contributions to soil organic carbon and in the production of bio-derived energy and materials.Biotechnology for biofuels · 2021Review
- Drought activates MYB41 orthologs and induces suberization of grapevine fine roots.Plant direct · 2020Article
- The sugarcane ShMYB78 transcription factor activates suberin biosynthesis in Nicotiana benthamiana.Plant molecular biology · 2020Article
- Insights Into the Regulation of the Expression Pattern of Calvin-Benson-Bassham Cycle Enzymes in CFrontiers in plant science · 2020Article
- Overexpression of ANAC046 Promotes Suberin Biosynthesis in Roots ofInternational journal of molecular sciences · 2019Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors at 4 institutions in 3 countries.
Funding
Abstract
backgroundGene activity is largely controlled by transcriptional regulation through the action of transcription factors and other regulators. QsMYB1 is a member of the R2R3-MYB transcription factor family related to secondary growth, and in particular, with the cork development process. In order to identify the putative gene targets of QsMYB1 across the cork oak genome we developed a ChIP-Seq strategy.
resultsResults provide direct evidence that QsMY1B targets genes encoding for enzymes involved in the lignin and suberin pathways as well as gene encoding for ABCG transporters and LTPs implicated in the transport of monomeric suberin units across the cellular membrane. These results highlight the role of QsMYB1 as a regulator of lignin and suberin biosynthesis, transport and assembly.
conclusionTo our knowledge, this work constitutes the first ChIP-Seq experiment performed in cork oak, a non-model plant species with a long-life cycle, and these results will contribute to deepen the knowledge about the molecular mechanisms of cork formation and differentiation.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.