Evidence map›Paper›PMID 30222731›Full record

ArticlePLoS biology2018

Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones.

Angela M Phillips, Anna I Ponomarenko, Kenny Chen, Orr Ashenberg, Jiayuan Miao, Sean M McHugh, Vincent L Butty, Charles A Whittaker, Christopher L Moore, Jesse D Bloom and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  8. Exploring the expanse between theoretical questions and experimental approaches in the modern study of evolvability.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2023
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  13. Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome.Journal of the American Chemical Society · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. HSF1 Activation Can Restrict HIV Replication.ACS infectious diseases · 2020
    Article
  19. Chemical Biology Framework to Illuminate Proteostasis.Annual review of biochemistry · 2020
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Angela M PhillipsDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-9806-7574
Anna I PonomarenkoDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-1393-5783
Kenny ChenDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-1939-9213
Orr AshenbergFred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Jiayuan MiaoDepartment of Chemistry, Tufts University, Medford, Massachusetts, United States of America.
Sean M McHughDepartment of Chemistry, Tufts University, Medford, Massachusetts, United States of America.
Vincent L ButtyBioMicro Center, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0003-1173-2429
Charles A WhittakerBioMicro Center, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Christopher L MooreDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Jesse D BloomFred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0003-1267-3408
Yu-Shan LinDepartment of Chemistry, Tufts University, Medford, Massachusetts, United States of America.ORCID 0000-0001-6460-2877
Matthew D ShouldersDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-6511-3431
Massachusetts Institute of Technology · USTufts University · USFred Hutch Cancer Center · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Angela Nicole Koehler · 1985 to 2026
$93.9M
TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YAFFE, MICHAEL B · 1985 to 2020
$25.6M
Continuous Directed Evolution of Biomolecules in Human Cells for Medical ResearchDP2GM119162 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHOULDERS, MATTHEW DONALD · 2015 to 2015
$2.3M
High-throughput experiments to guide influenza vaccine strain selectionR01AI127893 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BLOOM, JESSE D · 2016 to 2020
$2.1M
Mapping epistasis in molecular evolution: the influenza nucleoproteinR01GM102198 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BLOOM, JESSE D · 2012 to 2016
$1.6M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
NCI NIH HHS P30 CA014051NIAID NIH HHS R01 AI127893NIEHS NIH HHS P30 ES002109NIGMS NIH HHS DP2 GM119162NIGMS NIH HHS R01 GM102198NIH HHS S10 OD020069
6 · The paper itself

Abstract

The threat of viral pandemics demands a comprehensive understanding of evolution at the host-pathogen interface. Here, we show that the accessibility of adaptive mutations in influenza nucleoprotein at fever-like temperatures is mediated by host chaperones. Particularly noteworthy, we observe that the Pro283 nucleoprotein variant, which (1) is conserved across human influenza strains, (2) confers resistance to the Myxovirus resistance protein A (MxA) restriction factor, and (3) critically contributed to adaptation to humans in the 1918 pandemic influenza strain, is rendered unfit by heat shock factor 1 inhibition-mediated host chaperone depletion at febrile temperatures. This fitness loss is due to biophysical defects that chaperones are unavailable to address when heat shock factor 1 is inhibited. Thus, influenza subverts host chaperones to uncouple the biophysically deleterious consequences of viral protein variants from the benefits of immune escape. In summary, host proteostasis plays a central role in shaping influenza adaptation, with implications for the evolution of other viruses, for viral host switching, and for antiviral drug development.

Indexed as

Adaptation, PhysiologicalHost-Pathogen InteractionsImmune EvasionImmunity, InnateAmino Acid SequenceAnimalsBiophysical PhenomenaDNA Mutational AnalysisDogsHumansImmune SystemMadin Darby Canine Kidney CellsModels, BiologicalMolecular ChaperonesMyxovirus Resistance ProteinsNucleoproteinsMolecular ChaperonesMX1 protein, humanMyxovirus Resistance ProteinsNucleoproteinsViral Proteins

Identifiers

PMID30222731
PMCPMC6160216
OpenAlexW2889643461

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.