Evidence map›Paper›PMID 30221396›Full record

ArticleJournal of clinical laboratory analysis2019

Copy number variations in the GATA4, NKX2-5, TBX5, BMP4 CRELD1, and 22q11.2 gene regions in Chinese children with sporadic congenital heart disease.

Zhetao Li, Jiwei Huang, Biao Liang, Dingyuan Zeng, Shiqiang Luo, Tizhen Yan, Fengwen Liao, Jun Huang, Jingwen Li, Ren Cai and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Zhetao LiDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.ORCID http://orcid.org/0000-0002-4324-0608
Jiwei HuangDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Biao LiangDepartment of Pediatrics Surgery, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Dingyuan ZengDeparment of Gynaecology and Obstetrics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Shiqiang LuoDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Tizhen YanDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Fengwen LiaoDepartment of Pediatrics Surgery, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Jun HuangDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Jingwen LiDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Ren CaiDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Xine DengDepartment of the Perinatal Division, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Ning TangDepartment of Medical Genetics, Liuzhou Maternal and Children Healthcare Hospital, Liuzhou, China.
Liuzhou Maternal and Child Health Hospital · CN

Funding

Guangxi Scientific Research Technology Development Project Guigongke 1598011-8Guangxi Zhuang Autonomous Region Health Department Z20170545Liuzhou Science and Technology Development Program 2016G020219
6 · The paper itself

Abstract

backgroundCongenital heart disease (CHD) is a common birth defect originating from both environmental and genetic factors. An overabundance of copy number variations (CNVs) affecting cardiac-related genes has previously been detected in individuals with CHD.

objectiveTo evaluate if the presence of CNVs in the 22q11.2 region, and to determine whether GATA4, NKX2-5, TBX5, BMP, and CRELD1 genes contributed toward the pathogenesis of isolated incidences of CHDs in southwest China.

methodsIn total 167 patients from southwest China with sporadic CHD were studied, including 121 patients with ventricular septal defect (VSD), 24 with atrial septal defect (ASD), 12 with tetralogy of fallot (TOF), six VSD cases with TOF, two cases with patent ductus arteriosus (PDA), and two VSD cases with ASD. 22q11.2, GATA4, NKX2-5, TBX5, BMP4, and CRELD1 regions were screened using MLPA and copy number variation sequencing (CNV-Seq).

resultsA 2.5-2.8 Mb deletion in the 22q11.2 region was identified in 5 patients with CHD. Two of these patients were diagnosed with VSD, while two had VSD and ASD, and the other had TOF. 5 patients correspond to the same classical DiGeorge syndrome. A 0.86 Mb duplication in the 22q11.2 region was identified in a PDA patient, whom was without extracardiac symptoms.

conclusionThese data suggest that copy number variation in the 22q11.2 region is common in CHD patients in southwest China. Regardless of the presence or absence of extracardiac symptoms, results also indicate that it is necessary to perform prenatal screening for CHD.

Indexed as

Heart Defects, CongenitalAdolescentBone Morphogenetic Protein 4Cell Adhesion MoleculesChildChild, PreschoolChinaCohort StudiesDiGeorge SyndromeDNA Copy Number VariationsExtracellular Matrix ProteinsFemaleGATA4 Transcription FactorHomeobox Protein Nkx-2.5HumansInfantBMP4 protein, humanBone Morphogenetic Protein 4Cell Adhesion MoleculesCRELD1 protein, humanExtracellular Matrix ProteinsGATA4 protein, humanGATA4 Transcription FactorHomeobox Protein Nkx-2.5NKX2-5 protein, humanT-Box Domain ProteinsT-box transcription factor 522q11 regioncongenital heart diseasecopy number variationsMLPA

Identifiers

PMID30221396
PMCPMC6818592
OpenAlexW2891964343

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.