Evidence map›Paper›PMID 30221071›Full record

ArticleOncoimmunology

Gene expression profiling and immune cell-type deconvolution highlight robust disease progression and survival markers in multiple cohorts of CTCL patients.

Philippe Lefrançois, Pingxing Xie, Linghua Wang, Michael T Tetzlaff, Linda Moreau, Andrew K Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni and 4 more

Open access · goldAbstract read
In one paragraph

Article in Oncoimmunology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
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  8. The TOX subfamily: all-round players in the immune system.Clinical and experimental immunology · 2022
    Review
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  18. Oncoimmunology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Philippe LefrançoisDivision of Dermatology, McGill University Health Centre, Montreal, QC, Canada.ORCID 0000-0003-2939-7956
Pingxing XieDivision of Dermatology, McGill University Health Centre, Montreal, QC, Canada.
Linghua WangHuman Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Michael T TetzlaffDepartment of Pathology, Section of Dermatopathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Linda MoreauDivision of Dermatology, McGill University Health Centre, Montreal, QC, Canada.
Andrew K WattersDepartment of Pathology, McGill University Health Centre, Montreal, QC, Canada.
Elena NetchiporoukDivision of Dermatology, McGill University Health Centre, Montreal, QC, Canada.
Nathalie ProvostDivision of Dermatology, Université de Montréal, Montréal, QC, Canada.
Martin GilbertDivision of Dermatology, Université Laval, Québec, QC, Canada.
Xiao NiDepartment of Dermatology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0002-0154-446X
Denis SassevilleDivision of Dermatology, McGill University Health Centre, Montreal, QC, Canada.
David A WheelerHuman Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-9056-6299
Madeleine DuvicDepartment of Dermatology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0002-8971-4565
Ivan V LitvinovDivision of Dermatology, McGill University Health Centre, Montreal, QC, Canada.ORCID 0000-0003-0562-4675
McGill University Health Centre · CAThe University of Texas MD Anderson Cancer Center · USBaylor College of Medicine · USUniversité de Montréal · CAUniversité Laval · CAUniversity of Ottawa · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CTCL follows different courses depending on the clinical stage at the time of diagnosis. Patients with early stage Mycosis Fungoides (MF) variant of CTCL may experience an indolent course over decades, whereas patients with advanced MF and Sézary Syndrome (SS) disease at diagnosis, often succumb within 5 years. Even within early stage CTCL/MF, a minority of patients will progress to more advanced stages. We recently generated RNA sequencing data on 284 CTCL-relevant genes for 157 patients and identified differentially expressed genes across stages I-IV. In this study, we aim to validate robust molecular markers linked to disease progression and survival. We performed multiple hypothesis testing-corrected analysis of variance (ANOVA) on the expression of individual genes across all CTCL samples and early stage (≤IIA) CTCL/MF patients. We used

Indexed as

Cutaneous T-Cell Lymphoma (CTCL)diagnostic markersMycosis Fungoides (MF)prognostic markersSézary Syndrome (SS)

Identifiers

PMID30221071
PMCPMC6136868
OpenAlexW2799338998

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.