Evidence map›Paper›PMID 30218044›Full record

ArticleScientific reports2018

The Thaumarchaeon N. gargensis carries functional bioABD genes and has a promiscuous E. coli ΔbioH-complementing esterase EstN1.

Jennifer Chow, Dominik Danso, Manuel Ferrer, Wolfgang R Streit

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In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Genomic Insights of "Frontiers in microbiology · 2020
    Article
  6. Evolution ofPeerJ · 2020
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jennifer ChowMicrobiology and Biotechnology, University of Hamburg, 22609, Hamburg, Germany.
Dominik DansoMicrobiology and Biotechnology, University of Hamburg, 22609, Hamburg, Germany.
Manuel FerrerInstitute of Catalysis, Consejo Superior de Investigaciones Científicas, 28049, Madrid, Spain.
Wolfgang R StreitMicrobiology and Biotechnology, University of Hamburg, 22609, Hamburg, Germany. wolfgang.streit@uni-hamburg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biotin is an essential cofactor required for carboxylation and decarboxylation reactions in all domains of life. While biotin biosynthesis in most Bacteria and Eukarya is well studied, the complete pathway for this vitamer in Archaea is still not known. Detailed genome searches indicated the presence of possible bio gene clusters only in Methanococcales and Thaumarchaeota. Therefore, we analysed the functionality of the predicted genes bioA, bioB, bioD and bioF in the Thaumarchaeon Nitrososphaera gargensis Ga2.9 which are essential for the later steps of biotin synthesis. In complementation tests, the gene cluster-encoded N. gargensis bioABD genes except bioF restored growth of corresponding E. coli Rosetta-gami 2 (DE3) deletion mutants. To find out how biotin biosynthesis is initiated, we searched the genome for a possible bioH analogue encoding a pimeloyl-ACP-methylester carboxylesterase. The respective amino acid sequence of the ORF estN1 showed weak conserved domain similarity to this class of enzymes (e-value 3.70e

Indexed as

Amino Acid SequenceArchaeaBacterial ProteinsBiotinCloning, MolecularDNA, BacterialEscherichia coliEscherichia coli ProteinsGenes, BacterialGenetic Complementation TestMultigene FamilyProteobacteriaSulfurtransferasesTransaminasesBacterial ProteinsBioA protein, bacteriaBiotinbiotin synthase, E coliDNA, BacterialEscherichia coli ProteinsSulfurtransferasesTransaminases

Identifiers

PMID30218044
PMCPMC6138646

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.