Evidence map›Paper›PMID 30217978›Full record

ArticleNature communications2018

The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation.

Wenyi Mi, Yi Zhang, Jie Lyu, Xiaolu Wang, Qiong Tong, Danni Peng, Yongming Xue, Adam H Tencer, Hong Wen, Wei Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
  2. MOncogene · 2026
    Article
  3. Article
  4. Probing the Cancer Mutational Landscape of KMT2 Regulatory Subunits.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. DPF2 reads histone lactylation to drive transcription and tumorigenesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Genome-Wide Identification and Expression Analysis of theInternational journal of molecular sciences · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Loss-of-function of the Zinc Finger Homeobox 4 (medRxiv : the preprint server for health sciences · 2024
    Article
  18. Article
  19. Contributions of transcriptional noise to leukaemia evolution: KAT2A as a case-study.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Wenyi MiDepartment of Epigenetics and Molecular Carcinogenesis, Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030, USA.ORCID http://orcid.org/0000-0002-7453-051X
Yi ZhangDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, Colorado, 80045, USA.ORCID http://orcid.org/0000-0001-8170-9983
Jie LyuDan L. Duncan Cancer Center, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, 77030, USA.ORCID http://orcid.org/0000-0002-6530-5257
Xiaolu WangDepartment of Epigenetics and Molecular Carcinogenesis, Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030, USA.
Qiong TongDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, Colorado, 80045, USA.
Danni PengDepartment of Epigenetics and Molecular Carcinogenesis, Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030, USA.
Yongming XueDepartment of Epigenetics and Molecular Carcinogenesis, Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030, USA.ORCID http://orcid.org/0000-0001-7925-3024
Adam H TencerDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, Colorado, 80045, USA.
Hong WenDepartment of Epigenetics and Molecular Carcinogenesis, Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030, USA.
Wei LiDan L. Duncan Cancer Center, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, 77030, USA.ORCID http://orcid.org/0000-0001-9931-5990
Tatiana G KutateladzeDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, Colorado, 80045, USA. tatiana.kutateladze@ucdenver.edu.ORCID http://orcid.org/0000-0001-7375-6990
Xiaobing ShiDepartment of Epigenetics and Molecular Carcinogenesis, Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030, USA. xiaobing.shi@vai.org.ORCID http://orcid.org/0000-0001-5242-8189
Van Andel Institute · USUniversity of Colorado Denver · USBaylor College of Medicine · USThe University of Texas MD Anderson Cancer Center · USUniversity of Colorado Hospital · US

Funding

Computational and Experimental Modeling of Alternative PolyadenylationR01CA193466 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LI, WEI · 2016 to 2025
$3.3M
Role of GAS41 in Human CancerR01CA204020 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI SHI, XIAOBING · 2016 to 2020
$2.0M
Computational and Experimental Modeling of Epigenetic DNA MethylationR01HG007538 · NHGRI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LI, WEI · 2014 to 2018
$1.9M
Epigenetic regulation by PHF1R01GM106416 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2015 to 2018
$1.5M
Molecular mechanism of chromatin targeting by BRPF1R01GM100907 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2015 to 2018
$1.4M
Interdomain crosstalk in MORC3R01GM125195 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2017 to 2021
$1.3M
Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RP160237Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RP160739Leukemia and Lymphoma Society (LLS) 1339-17NCI NIH HHS R01 CA193466NCI NIH HHS R01 CA204020NHGRI NIH HHS R01 HG007538NIGMS NIH HHS R01 GM100907NIGMS NIH HHS R01 GM106416NIGMS NIH HHS R01 GM125195U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM100907U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM106416U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM125195U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA193466U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA204020U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) HG007538
6 · The paper itself

Abstract

Recognition of histones by epigenetic readers is a fundamental mechanism for the regulation of chromatin and transcription. Most reader modules target specific post-translational modifications on histones. Here, we report the identification of a reader of histone H3, the ZZ-type zinc finger (ZZ) domain of ZZZ3, a subunit of the Ada-two-A-containing (ATAC) histone acetyltransferase complex. The solution NMR structure of the ZZ in complex with the H3 peptide reveals a unique binding mechanism involving caging of the N-terminal Alanine 1 of histone H3 in an acidic cavity of the ZZ domain, indicating a specific recognition of H3 versus other histones. Depletion of ZZZ3 or disruption of the ZZ-H3 interaction dampens ATAC-dependent promoter histone H3K9 acetylation and target gene expression. Overall, our study identifies the ZZ domain of ZZZ3 as a histone H3 reader that is required for the ATAC complex-mediated maintenance of histone acetylation and gene activation.

Indexed as

AcetylationDNA-Binding ProteinsEpigenesis, GeneticHEK293 CellsHistone AcetyltransferasesHistone CodeHistonesHumansMagnetic Resonance SpectroscopyProtein Processing, Post-TranslationalSpectrometry, FluorescenceTranscriptional ActivationTranscription FactorsZinc FingersDNA-Binding ProteinsHistone AcetyltransferasesHistonesTranscription FactorsZZZ3 protein, human

Identifiers

PMID30217978
PMCPMC6138639
OpenAlexW2892220278

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.