Evidence map›Paper›PMID 30217818›Full record

ArticleThe Journal of biological chemistry2018

Phosphatase activity of small C-terminal domain phosphatase 1 (SCP1) controls the stability of the key neuronal regulator RE1-silencing transcription factor (REST).

Nathaniel Tate Burkholder, Joshua E Mayfield, Xiaohua Yu, Seema Irani, Daniel K Arce, Faqin Jiang, Wendy L Matthews, Yuanchao Xue, Yan Jessie Zhang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. REST in the Road Map of Brain Development.Cellular and molecular neurobiology · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Nathaniel Tate BurkholderFrom the Departments of Molecular Biosciences and.
Joshua E MayfieldFrom the Departments of Molecular Biosciences and.
Xiaohua Yuthe Key Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, and.
Seema IraniChemical Engineering, and.
Daniel K ArceFrom the Departments of Molecular Biosciences and.
Faqin Jiangthe School of Pharmacy, Shanghai Jiao Tong University, Shanghai 200240, China.
Wendy L MatthewsFrom the Departments of Molecular Biosciences and.
Yuanchao Xuethe Key Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, and.
Yan Jessie ZhangFrom the Departments of Molecular Biosciences and jzhang@cm.utexas.edu.
The University of Texas at Austin · USChinese Academy of Sciences · CNInstitute of Biophysics · CNShanghai Jiao Tong University · CN

Funding

Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Interpretation of the phosphorylation code of RNA polymerase II during eukaryotic transcriptionR01GM125882 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S., ZHANG, YAN JESSIE · 2018 to 2021
$1.4M
NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R01 GM125882
6 · The paper itself

Abstract

The RE1-silencing transcription factor (REST) is the major scaffold protein for assembly of neuronal gene silencing complexes that suppress gene transcription through regulating the surrounding chromatin structure. REST represses neuronal gene expression in stem cells and non-neuronal cells, but it is minimally expressed in neuronal cells to ensure proper neuronal development. Dysregulation of REST function has been implicated in several cancers and neurological diseases. Modulating REST gene silencing is challenging because cellular and developmental differences can affect its activity. We therefore considered the possibility of modulating REST activity through its regulatory proteins. The human small C-terminal domain phosphatase 1 (SCP1) regulates the phosphorylation state of REST at sites that function as REST degradation checkpoints. Using kinetic analysis and direct visualization with X-ray crystallography, we show that SCP1 dephosphorylates two degron phosphosites of REST with a clear preference for phosphoserine 861 (pSer-861). Furthermore, we show that SCP1 stabilizes REST protein levels, which sustains REST's gene silencing function in HEK293 cells. In summary, our findings strongly suggest that REST is a

Indexed as

Amino Acid MotifsCrystallography, X-RayGene SilencingHEK293 CellsHumansKineticsNeuronsNuclear ProteinsPhosphoprotein PhosphatasesPhosphorylationProtein StabilityProteolysisRE1-Silencing Transcription FactorRepressor ProteinsCTDSP1 protein, humanNuclear ProteinsPhosphoprotein PhosphatasesRE1-Silencing Transcription FactorRepressor Proteinsbrain-derived neurotrophic factor (BDNF)CTD small phosphatase 1 (CTDSP1)gene silencingneurodifferentiationnuclear phosphatasephosphatasepost-transcriptional regulationX-ray crystallography

Identifiers

PMID30217818
PMCPMC6204920
OpenAlexW2890318829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.