Evidence map›Paper›PMID 30217813›Full record

ArticleThe Journal of biological chemistry2018

Structural and spectroscopic analyses of the sporulation killing factor biosynthetic enzyme SkfB, a bacterial AdoMet radical sactisynthase.

Tsehai A J Grell, William M Kincannon, Nathan A Bruender, Elizabeth J Blaesi, Carsten Krebs, Vahe Bandarian, Catherine L Drennan

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  15. Trapping a cross-linked lysine-tryptophan radical in the catalytic cycle of the radical SAM enzyme SuiB.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tsehai A J GrellFrom the Departments of Chemistry and.
William M KincannonDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, and.
Nathan A BruenderDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, and.
Elizabeth J BlaesiDepartments of Chemistry and.
Carsten KrebsDepartments of Chemistry and ckrebs@psu.edu.
Vahe BandarianDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, and vahe@chem.utah.edu.
Catherine L DrennanFrom the Departments of Chemistry and cdrennan@mit.edu.

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
This proposal is in response to PA-20-272. It is an administrative supplement to purchase a new peptide synthesizer to support R35 GM126956R35GM126956 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI VAHE BANDARIAN · 2018 to 2026
$5.3M
Biosynthesis of Deazapurine-Containing MetabolitesR01GM072623 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2005 to 2017
$3.9M
Metalloenzyme structure, function and assemblyR35GM126982 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CATHERINE L DRENNAN · 2018 to 2026
$3.4M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Mechanistic studies of thioether crosslink formation in peptidesR01GM120638 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2016 to 2017
$695k
Mechanisms of Radical Translocation in Class I Ribonucleotide ReductasesF32GM116353 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLAESI, ELIZABETH J · 2015 to 2017
$160k
NCRR NIH HHS S10 RR029205NIGMS NIH HHS F32 GM116353NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM072623NIGMS NIH HHS R01 GM120638NIGMS NIH HHS R35 GM126956NIGMS NIH HHS R35 GM126982
6 · The paper itself

Abstract

Sactipeptides are a subclass of ribosomally synthesized and post-translationally modified peptides (RiPPs). They contain a unique thioether bond, referred to as a sactionine linkage, between the sulfur atom of a cysteine residue and the α-carbon of an acceptor residue. These linkages are formed via radical chemistry and are essential for the spermicidal, antifungal, and antibacterial properties of sactipeptides. Enzymes that form these linkages, called sactisynthases, are AdoMet radical enzymes in the SPASM/Twitch subgroup whose structures are incompletely characterized. Here, we present the X-ray crystal structure to 1.29-Å resolution and Mössbauer analysis of SkfB, a sactisynthase from

Indexed as

Bacillus subtilisBacterial ProteinsCrystallography, X-RayLigasesProtein DomainsProtein Structure, SecondaryS-AdenosylmethionineBacterial ProteinsLigasesS-AdenosylmethionineAdoMet radical enzymescatalysiscrystal structureenzyme catalysisenzyme structureiron sulfur clustersmetalloenzymeradical SAMsactionine linkagesporulation killing factor

Identifiers

PMID30217813
PMCPMC6231123

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.