Evidence map›Paper›PMID 30217595›Full record

ArticleDevelopmental biology2018

A spontaneous mouse deletion in Mctp1 uncovers a long-range cis-regulatory region crucial for NR2F1 function during inner ear development.

Basile Tarchini, Chantal Longo-Guess, Cong Tian, Abigail L D Tadenev, Nicholas Devanney, Kenneth R Johnson

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Basile TarchiniThe Jackson Laboratory, Bar Harbor, ME 04609, USA; Department of Medicine, Tufts University, Boston 02111, MA, USA; Graduate School of Biomedical Science and Engineering (GSBSE), University of Maine, Orono 04469, ME, USA. Electronic address: basile.tarchini@jax.org.
Chantal Longo-GuessThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Cong TianThe Jackson Laboratory, Bar Harbor, ME 04609, USA; Graduate School of Biomedical Science and Engineering (GSBSE), University of Maine, Orono 04469, ME, USA.
Abigail L D TadenevThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Nicholas DevanneyThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Kenneth R JohnsonThe Jackson Laboratory, Bar Harbor, ME 04609, USA. Electronic address: ken.johnson@jax.org.
Jackson Laboratory · USTufts University · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
CLONING TWO NEW DEAFNESS MUTATIONSR01DC004301 · NIDCD · JACKSON LABORATORY · PI JOHNSON, KENNETH R · 2000 to 2017
$8.6M
Hair Cell Polarization and Sensory Bundle DevelopmentR01DC015242 · NIDCD · JACKSON LABORATORY · PI Basile Robin Tarchini · 2017 to 2026
$5.4M
NCI NIH HHS P30 CA034196NIDCD NIH HHS R01 DC004301NIDCD NIH HHS R01 DC015242
6 · The paper itself

Abstract

Hundreds of thousands of cis-regulatory DNA sequences are predicted in vertebrate genomes, but unlike genes themselves, few have been characterized at the functional level or even unambiguously paired with a target gene. Here we serendipitously identified and started investigating the first reported long-range regulatory region for the Nr2f1 (Coup-TFI) transcription factor gene. NR2F1 is temporally and spatially regulated during development and required for patterning and regionalization in the nervous system, including sensory hair cell organization in the auditory epithelium of the cochlea. Analyzing the deaf wanderer (dwnd) spontaneous mouse mutation, we traced back the cause of its associated circling behavior to a 53 kb deletion removing five exons and adjacent intronic regions of the poorly characterized Mctp1 gene. Interestingly, loss of Mctp1 function cannot account for the hearing loss, inner ear dysmorphology and sensory hair cell disorganization observed in dwnd mutants. Instead, we found that the Mctp1

Indexed as

AnimalsCOUP Transcription Factor IDeafnessEar, InnerEnhancer Elements, GeneticFemaleGene DeletionGene Expression Regulation, DevelopmentalGene Knockout TechniquesHumansMaleMembrane ProteinsMiceMice, Inbred C57BLCOUP Transcription Factor IMCTP1 protein, humanMembrane ProteinsNr2f1 protein, mouseCis-regulationDeafnessInner ear developmentLong-range enhancerMctp1Nr2f1

Identifiers

PMID30217595
PMCPMC6214362
OpenAlexW2890272638

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.