Evidence map›Paper›PMID 30214002›Full record

ArticleScientific reports2018

A new method for discovering EMAST sequences in animal models of cancer.

Nitya Bhaskaran, Jennifer Luu, Scott T Kelley, Mohammad W Khan, Priyadarshini Mamindla, Kathleen L McGuire

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nitya BhaskaranDepartment of Biology, Molecular Biology Institute, San Diego State University, San Diego, CA, 92182, USA.
Jennifer LuuDepartment of Biology, Molecular Biology Institute, San Diego State University, San Diego, CA, 92182, USA.
Scott T KelleyDepartment of Biology, Molecular Biology Institute, San Diego State University, San Diego, CA, 92182, USA.
Mohammad W KhanDepartment of Biology, Molecular Biology Institute, San Diego State University, San Diego, CA, 92182, USA.
Priyadarshini MamindlaDepartment of Biology, Molecular Biology Institute, San Diego State University, San Diego, CA, 92182, USA.
Kathleen L McGuireDepartment of Biology, Molecular Biology Institute, San Diego State University, San Diego, CA, 92182, USA. kmcguire@sdsu.edu.
San Diego State University · US

Funding

Inflammatory Differentiation of Colorectal Cancer Among African AmericansU01CA162147 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARETHERS, JOHN M · 2012 to 2016
$1.4M
NCI NIH HHS U01 CA162147
6 · The paper itself

Abstract

Elevated Microsatellite Alterations at Selected Tetranucleotide repeats (EMAST) occur in up to 60% of colorectal cancers and may associate with aggressive and advanced disease in patients. Although EMAST occurs in many cancer types, current understanding is limited due to the lack of an animal model. Reported here is the design and implementation of an algorithm for detecting EMAST repeats in mice. This algorithm incorporates properties of known human EMAST sequences to identify repeat sequences in animal genomes and was able to identify EMAST-like sequences in the mouse. Seven of the identified repeats were analyzed further in a colon cancer mouse model and six of the seven displayed EMAST instability characteristic of that seen in human colorectal cancers. In conclusion, the algorithm developed successfully identified EMAST repeats in an animal genome and, for the first time, EMAST has been shown to occur in a mouse model of colon cancer.

Indexed as

Microsatellite InstabilityAlgorithmsAnimalsColorectal NeoplasmsDisease Models, AnimalGenomeHumansMiceMicrosatellite Repeats

Identifiers

PMID30214002
PMCPMC6137214
OpenAlexW2890858726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.