Evidence map›Paper›PMID 30213974›Full record

ArticleScientific reports2018

Geobiology reveals how human kidney stones dissolve in vivo.

Mayandi Sivaguru, Jessica J Saw, James C Williams, John C Lieske, Amy E Krambeck, Michael F Romero, Nicholas Chia, Andrew L Schwaderer, Reinaldo E Alcalde, William J Bruce and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 64 citations in OpenAlex.

  1. Trial
  2. Intercalated bacterial biofilms are intrinsic internal components of calcium-based kidney stones.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
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  6. Risk Factors of Asymptomatic Kidney Stone Passage in Adults with Recurrent Kidney Stones.Clinical journal of the American Society of Nephrology : CJASN · 2024
    Article
  7. Article
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  10. Layered structure of sialoliths compared with tonsilloliths and antroliths.Journal of the Korean Association of Oral and Maxillofacial Surgeons · 2024
    Article
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  12. Article
  13. Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 1 country.

Mayandi SivaguruCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA. sivaguru@illinois.edu.
Jessica J SawCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA. jsaw2@illinois.edu.ORCID 0000-0002-8671-7250
James C WilliamsDepartment of Anatomy and Cell Biology, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0001-6665-6596
John C LieskeDivision of Nephrology and Hypertension, Mayo Clinic, Rochester, MN, USA.
Amy E KrambeckDepartment of Urology, Mayo Clinic, Rochester, MN, USA.
Michael F RomeroDepartment of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.
Nicholas ChiaDepartment of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.
Andrew L SchwadererDepartment of Pediatric Nephrology, Indiana University School of Medicine, Indianapolis, IN, USA.
Reinaldo E AlcaldeCivil, Architectural and Environmental Engineering, University of Texas at Austin, Austin, TX, USA.
William J BruceLoyola University Chicago, Stritch School of Medicine, Maywood, IL, USA.ORCID 0000-0003-2579-126X
Derek E WildmanCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Glenn A FriedCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Charles J WerthCivil, Architectural and Environmental Engineering, University of Texas at Austin, Austin, TX, USA.
Richard J ReederDepartment of Geosciences, Stony Brook University, Stony Brook, NY, 11794, USA.
Peter M YauProtein Sciences, Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Robert A SanfordCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Bruce W FoukeCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA. fouke@illinois.edu.
University of Illinois Urbana-Champaign · USCarle Foundation Hospital · USIndiana University School of MedicineMayo Clinic · USThe University of Texas at Austin · USLoyola University Chicago · USMayo Clinic in Arizona · USMayo Clinic in Florida · USStony Brook University · US

Funding

VISUALIZATION AND PATHOPHYSIOLOGY OF RENAL STONE PRECURSOR LESIONSU54DK100227 · NIDDK · MAYO CLINIC ROCHESTER · PI LIESKE, JOHN C · 2013 to 2017
$6.3M
Mayo Clinic Summer Undergraduate Research in Nephrology & UrologyR25DK101405 · NIDDK · MAYO CLINIC ROCHESTER · PI MICHAEL F. ROMERO · 2014 to 2026
$1.6M
National Aeronautics and Space Administration (NASA) NNA13AA91ANIDDK NIH HHS R25 DK101405NIDDK NIH HHS U54 DK100227
6 · The paper itself

Abstract

More than 10% of the global human population is now afflicted with kidney stones, which are commonly associated with other significant health problems including diabetes, hypertension and obesity. Nearly 70% of these stones are primarily composed of calcium oxalate, a mineral previously assumed to be effectively insoluble within the kidney. This has limited currently available treatment options to painful passage and/or invasive surgical procedures. We analyze kidney stone thin sections with a combination of optical techniques, which include bright field, polarization, confocal and super-resolution nanometer-scale auto-fluorescence microscopy. Here we demonstrate using interdisciplinary geology and biology (geobiology) approaches that calcium oxalate stones undergo multiple events of dissolution as they crystallize and grow within the kidney. These observations open a fundamentally new paradigm for clinical approaches that include in vivo stone dissolution and identify high-frequency layering of organic matter and minerals as a template for biomineralization in natural and engineered settings.

Indexed as

Calcium OxalateCrystallizationHumansKidneyKidney CalculiMicroscopy, ConfocalMineralsCalcium OxalateMinerals

Identifiers

PMID30213974
PMCPMC6137216
OpenAlexW2891768065

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.