ArticlePloS one2018
The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 43 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
43 citing papers in PubMed, 85 citations in OpenAlex.
- Dams and Introduced Species Drive Patterns of Environmental Adaptation in an Iconic but Imperiled Coldwater Fish (Brook Trout,Evolutionary applications · 2026Article
- Range-wide climate risk and adaptive potential in a cold-water fish species.Nature communications · 2025Article
- A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout (Salvelinus fontinalis).Molecular ecology resources · 2025Article
- Chromosome-level genome assembly of a doubled haploid brook trout (Salvelinus fontinalis).G3 (Bethesda, Md.) · 2025Article
- A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus.Genetica · 2024Article
- Editorial Note: Design and characterization of an 87k SNP genotyping array for Arctic charr (Salvelinus alpinus).PloS one · 2024Article
- The late-evolving salmon and trout join the GnRH1 club.Histochemistry and cell biology · 2023Article
- Widespread Deviant Patterns of Heterozygosity in Whole-Genome Sequencing Due to Autopolyploidy, Repeated Elements, and Duplication.Genome biology and evolution · 2023Article
- Rapid and biased evolution of canalization during adaptive divergence revealed by dominance in gene expression variability during Arctic charr early development.Communications biology · 2023Article
- A chromosome-anchored genome assembly for Lake Trout (Salvelinus namaycush).Molecular ecology resources · 2022Article
- Neutral and adaptive drivers of genomic change in introduced brook trout (Ecology and evolution · 2022Article
- Genome-Wide Reconstruction of Rediploidization Following Autopolyploidization across One Hundred Million Years of Salmonid Evolution.Molecular biology and evolution · 2022Article
- Alternative splicing and gene expression play contrasting roles in the parallel phenotypic evolution of a salmonid fish.Molecular ecology · 2021Article
- A candidate chromosome inversion in Arctic charr (Salvelinus alpinus) identified by population genetic analysis techniques.G3 (Bethesda, Md.) · 2021Article
- Article
- Investigating the morphological and genetic divergence of arctic char (Ecology and evolution · 2021Article
- Fate of MHCII in salmonids following 4WGD.Immunogenetics · 2021Article
- MHC class I evolution; from Northern pike to salmonids.BMC ecology and evolution · 2021Article
- Article
- Correction: The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome.PloS one · 2021Article
Corrections and comments
- Retraction · 2021-02-09Error in Analyses · Error in Results and/or Conclusions ·
- Retracted
Authors and funding
13 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Arctic charr have a circumpolar distribution, persevere under extreme environmental conditions, and reach ages unknown to most other salmonids. The Salvelinus genus is primarily composed of species with genomes that are structured more like the ancestral salmonid genome than most Oncorhynchus and Salmo species of sister genera. It is thought that this aspect of the genome may be important for local adaptation (due to increased recombination) and anadromy (the migration of fish from saltwater to freshwater). In this study, we describe the generation of a new genetic map, the sequencing and assembly of the Arctic charr genome (GenBank accession: GCF_002910315.2) using the newly created genetic map and a previous genetic map, and present several analyses of the Arctic charr genes and genome assembly. The newly generated genetic map consists of 8,574 unique genetic markers and is similar to previous genetic maps with the exception of three major structural differences. The N50, identified BUSCOs, repetitive DNA content, and total size of the Arctic charr assembled genome are all comparable to other assembled salmonid genomes. An analysis to identify orthologous genes revealed that a large number of orthologs could be identified between salmonids and many appear to have highly conserved gene expression profiles between species. Comparing orthologous gene expression profiles may give us a better insight into which genes are more likely to influence species specific phenotypes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.