Evidence map›Paper›PMID 30212548›Full record

ArticlePloS one2018

Evolutionary history and spatiotemporal dynamics of the HIV-1 subtype B epidemic in Guatemala.

Yaxelis Mendoza, Claudia García-Morales, Gonzalo Bello, Daniela Garrido-Rodríguez, Daniela Tapia-Trejo, Juan Miguel Pascale, Amalia Carolina Girón-Callejas, Ricardo Mendizábal-Burastero, Ingrid Yessenia Escobar-Urias, Blanca Leticia García-González and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Yaxelis MendozaGorgas Memorial Institute for Health Studies, Panama City, Panama.
Claudia García-MoralesCentre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico.
Gonzalo BelloLaboratório de AIDS e Imunologia Molecular, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil.
Daniela Garrido-RodríguezCentre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico.
Daniela Tapia-TrejoCentre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico.
Juan Miguel PascaleGorgas Memorial Institute for Health Studies, Panama City, Panama.
Amalia Carolina Girón-CallejasUniversidad del Valle de Guatemala, Guatemala City, Guatemala.
Ricardo Mendizábal-BurasteroUniversidad del Valle de Guatemala, Guatemala City, Guatemala.
Ingrid Yessenia Escobar-UriasInfectious Diseases Clinic, Roosevelt Hospital, Guatemala City, Guatemala.
Blanca Leticia García-GonzálezInfectious Diseases Clinic, Roosevelt Hospital, Guatemala City, Guatemala.
Jessenia Sabrina Navas-CastilloInfectious Diseases Clinic, Roosevelt Hospital, Guatemala City, Guatemala.
María Cristina Quintana-GalindoInfectious Diseases Clinic, Roosevelt Hospital, Guatemala City, Guatemala.
Rodolfo Pinzón-MezaInfectious Diseases Clinic, Roosevelt Hospital, Guatemala City, Guatemala.
Carlos Rodolfo Mejía-VillatoroInfectious Diseases Clinic, Roosevelt Hospital, Guatemala City, Guatemala.
Santiago Avila-RíosCentre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico.ORCID 0000-0003-3371-4248
Gustavo Reyes-TeránCentre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico.
Roosevelt Hospital · GTUniversidad del Valle de Guatemala · GTFundação Oswaldo Cruz · BRInstituto Conmemorativo Gorgas de Estudios de la Salud · PAUniversidad de Panamá · PA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Different explanations exist on how HIV-1 subtype B spread in Central America, but the role of Guatemala, the Central American country with the highest number of people living with the virus, in this scenario is unknown. We investigated the evolutionary history and spatiotemporal dynamics of HIV-1 subtype B in Guatemala. A total of 1,047 HIV-1 subtype B pol sequences, from newly diagnosed ART-naïve, HIV-infected Guatemalan subjects enrolled between 2011 and 2013 were combined with published subtype B sequences from other Central American countries (n = 2,101) and with reference sequences representative of the BPANDEMIC and BCAR lineages from the United States (n = 465), France (n = 344) and the Caribbean (n = 238). Estimates of evolutionary, demographic, and phylogeographic parameters were obtained from sequence data using maximum likelihood and Bayesian coalescent-based methods. The majority of Guatemalan sequences (98.9%) belonged to the BPANDEMIC clade, and 75.2% of these sequences branched within 10 monophyletic clades: four also included sequences from other Central American countries (BCAM-I to BCAM-IV) and six were mostly (>99%) composed by Guatemalan sequences (BGU clades). Most clades mainly comprised sequences from heterosexual individuals. Bayesian coalescent-based analyses suggested that BGU clades originated during the 1990s and 2000s, whereas BCAM clades originated between the late 1970s and mid 1980s. The major hub of dissemination of all BGU, and of BCAM-II, and BCAM-IV clades was traced to the Department of Guatemala, while the root location of BCAM-I and BCAM-III was traced to Honduras. Most Guatemalan clades experienced initial phases of exponential growth (0.23 and 3.6 year-1), followed by recent growth declines. Our observations suggest that the Guatemalan HIV-1 subtype B epidemic is driven by dissemination of multiple BPANDEMIC founder viral strains, some restricted to Guatemala and others widely disseminated in the Central American region, with Guatemala City identified as a major hub of viral dissemination. Our results also suggest the existence of different sub-epidemics within Guatemala for which different targeted prevention efforts might be needed.

Indexed as

EpidemicsAdultBayes TheoremCentral AmericaEvolution, MolecularFemaleGuatemalaHIV-1HIV InfectionsHumansLikelihood FunctionsMaleMiddle AgedMolecular EpidemiologyPhylogenyPhylogeographypol Gene Products, Human Immunodeficiency Virus

Identifiers

PMID30212548
PMCPMC6136800
OpenAlexW2889634290

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.