Evidence map›Paper›PMID 30212546›Full record

ArticlePloS one2018

Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.

Abha Zaka, Genelou Grande, Thea Coronejo, Ian Lorenzo Quibod, Chun-Wei Chen, Su-Jein Chang, Boris Szurek, Muhammad Arif, Casiana Vera Cruz, Ricardo Oliva

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. SNP Discovery of 3 K RICE Panel for Specific Traits.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Review
  3. Review
  4. Article
  5. Resistance gene againstFrontiers in plant science · 2026
    Review
  6. Review
  7. Article
  8. The Overexpression ofPlants (Basel, Switzerland) · 2025
    Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Abha ZakaAgriculture Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Jhang road, Faisalabad, Punjab, Pakistan.ORCID 0000-0001-7683-2485
Genelou GrandeRice Breeding Platform, International Rice Research Institute, Metro Manila, Philippines.
Thea CoronejoRice Breeding Platform, International Rice Research Institute, Metro Manila, Philippines.
Ian Lorenzo QuibodRice Breeding Platform, International Rice Research Institute, Metro Manila, Philippines.
Chun-Wei ChenTaiwan Agricultural Research Institute, Agricultural Research and Extension Station, Council of Agriculture, Guannan, Miaoli District, Taiwan.
Su-Jein ChangTaiwan Agricultural Research Institute, Agricultural Research and Extension Station, Council of Agriculture, Guannan, Miaoli District, Taiwan.
Boris SzurekIRD, CIRAD, Université Montpellier, IPME, Montpellier, France.
Muhammad ArifAgriculture Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Jhang road, Faisalabad, Punjab, Pakistan.
Casiana Vera CruzRice Breeding Platform, International Rice Research Institute, Metro Manila, Philippines.
Ricardo OlivaRice Breeding Platform, International Rice Research Institute, Metro Manila, Philippines.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial blight, caused by Xanthomonas oryzae pv. oryzae (Xoo), is one of the major diseases that impact rice production in Asia. The bacteria use transcription activator-like effectors (TALEs) to hijack the host transcription machinery and activate key susceptibility (S) genes, specifically members of the SWEET sucrose uniporters through the recognition of effector-binding element (EBEs) in the promoter regions. However, natural variations in the EBEs that alter the binding affinity of TALEs usually prevent sufficient induction of SWEET genes, leading to resistance phenotypes. In this study, we identified candidate resistance alleles by mining a rice diversity panel for mutations in the promoter of OsSWEET13 and OsSWEET14, which are direct targets of three major TALEs PthXo2, PthXo3 and AvrXa7. We found natural variations at the EBE of both genes, which appeared to have emerged independently in at least three rice subspecies. For OsSWEET13, a 2-bp deletion at the 5th and 6th positions of the EBE, and a substitution at the 17th position appear to be sufficient to prevent activation by PthXo2. Similarly, a single nucleotide substitution at position 10 compromised the induction of OsSWEET14 by AvrXa7. These findings might increase our opportunities to reduce pathogen virulence by preventing the induction of SWEET transporters. Pyramiding variants along with other resistance genes may provide durable and broad-spectrum resistance to the disease.

Indexed as

Genetic VariationAllelesAmino Acid SequenceDisease ResistanceGenotypeINDEL MutationOryzaPhenotypePhylogenyPlant DiseasesPlant ProteinsPolymorphism, Single NucleotidePromoter Regions, GeneticVirulenceXanthomonasPlant Proteins

Identifiers

PMID30212546
PMCPMC6136755

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.