Evidence map›Paper›PMID 30212471›Full record

ArticlePloS one2018

Bayesian analysis of isothermal titration calorimetry for binding thermodynamics.

Trung Hai Nguyen, Ariën S Rustenburg, Stefan G Krimmer, Hexi Zhang, John D Clark, Paul A Novick, Kim Branson, Vijay S Pande, John D Chodera, David D L Minh

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Introducing Quantitative Assessment of Michaelis Constant (KChembiochem : a European journal of chemical biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. CALX-CBD1 CaBiophysical journal · 2020
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Trung Hai NguyenDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, United States of America.
Ariën S RustenburgComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, United States of America.
Stefan G KrimmerDepartment of Pharmaceutical Chemistry, University of Marburg, Marbacher Weg 6, Marburg, Germany.
Hexi ZhangDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, United States of America.
John D ClarkDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, United States of America.
Paul A NovickDepartment of Chemistry, Stanford University, Stanford, CA, United States of America.
Kim BransonDepartment of Chemistry, Stanford University, Stanford, CA, United States of America.
Vijay S PandeDepartment of Chemistry, Stanford University, Stanford, CA, United States of America.
John D ChoderaComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, United States of America.
David D L MinhDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, United States of America.ORCID 0000-0002-4802-2618

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
The role of reorganization energy in achieving selective kinase inhibition"R01GM121505 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI CHODERA, JOHN DAMON · 2017 to 2021
$1.8M
Sound-stage Virtual Screening Based on Implicit Ligand TheoryR15GM114781 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI MINH, DAVID DO LE · 2015 to 2015
$337k
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM121505NIGMS NIH HHS R15 GM114781
6 · The paper itself

Abstract

Isothermal titration calorimetry (ITC) is the only technique able to determine both the enthalpy and entropy of noncovalent association in a single experiment. The standard data analysis method based on nonlinear regression, however, provides unrealistically small uncertainty estimates due to its neglect of dominant sources of error. Here, we present a Bayesian framework for sampling from the posterior distribution of all thermodynamic parameters and other quantities of interest from one or more ITC experiments, allowing uncertainties and correlations to be quantitatively assessed. For a series of ITC measurements on metal:chelator and protein:ligand systems, the Bayesian approach yields uncertainties which represent the variability from experiment to experiment more accurately than the standard data analysis. In some datasets, the median enthalpy of binding is shifted by as much as 1.5 kcal/mol. A Python implementation suitable for analysis of data generated by MicroCal instruments (and adaptable to other calorimeters) is freely available online.

Indexed as

BacillusBacterial ProteinsBayes TheoremBiophysical PhenomenaCalorimetryChelating AgentsComputer SimulationEdetic AcidLigandsMagnesiumMarkov ChainsMonte Carlo MethodProtein BindingSignal Processing, Computer-AssistedSoftwareThermodynamicsBacterial ProteinsChelating AgentsEdetic AcidLigandsMagnesiumThermolysin

Identifiers

PMID30212471
PMCPMC6136728

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.