Evidence map›Paper›PMID 30211483›Full record

ArticleProteomics2018

Identification of Changing Ribosome Protein Compositions using Mass Spectrometry.

Parimal Samir, Christopher M Browne, Rahul, Ming Sun, Bingxin Shen, Wen Li, Joachim Frank, Andrew J Link

Abstract read
In one paragraph

Article in Proteomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. High-throughput approaches for the identification of ribosome heterogeneity.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  6. Article
  7. Ribosome Structural Changes Dynamically Affect Ribosome Function.International journal of molecular sciences · 2024
    Review
  8. Article
  9. Article
  10. The Proteomic Analysis of Cancer-Related Alterations in the Human Unfoldome.International journal of molecular sciences · 2024
    Article
  11. Article
  12. Review
  13. In vivo structure probing of RNA inRNA (New York, N.Y.) · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Parimal SamirDepartment of Biochemistry, Vanderbilt University, Nashville, TN, 37235, USA.
Christopher M BrowneDepartment of Biochemistry, Vanderbilt University, Nashville, TN, 37235, USA.
RahulUniversity of Waterloo, Waterloo, ON, Canada.
Ming SunDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
Bingxin ShenDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
Wen LiDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
Joachim FrankDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
Andrew J LinkDepartment of Biochemistry, Vanderbilt University, Nashville, TN, 37235, USA.
Columbia University · USVanderbilt University · USInstitute of Molecular Biology and Biophysics · RUUniversity of Waterloo · CA

Funding

STRUCTURE ANALYSIS OF MACROMOLECULAR ASSEMBLIESR01GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1985 to 2019
$6.1M
Proteomic Analysis of Eukaryotic Protein SynthesisR01GM064779 · NIGMS · VANDERBILT UNIVERSITY · PI LINK, ANDREW J. · 2002 to 2010
$3.0M
CELLULAR AND MOLECULAR MICROBIOLOGY TRAINING PROGRAMT32AI007611 · NIAID · VANDERBILT UNIVERSITY · PI HAWIGER, JACK J · 1999 to 2010
$1.6M
LTQ Orbitrap Hybrid FT Mass Spectrometry System for Proteomic AnalysisS10RR024610 · NCRR · VANDERBILT UNIVERSITY · PI LINK, ANDREW J. · 2009 to 2009
$500k
Functional Analysis of ZNF9 in Myotonic Dystrophy Type 2R21AR055231 · NIAMS · VANDERBILT UNIVERSITY · PI LINK, ANDREW J. · 2008 to 2009
$338k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR024610NIAID NIH HHS T32 AI007611NIAMS NIH HHS R21 AR055231NIGMS NIH HHS R01 GM029169NIGMS NIH HHS R01 GM064779NIGMS NIH HHS R01 GM29169NIGMS NIH HHS R01 grant GM64779
6 · The paper itself

Abstract

The regulatory role of the ribosome in gene expression has come into sharper focus. It has been proposed that ribosomes are dynamic complexes capable of changing their protein composition in response to environmental stimuli. MS is applied to identify quantitative changes in the protein composition of S. cerevisiae 80S ribosomes in response to different environmental stimuli. Using quantitative MS, it is found that the paralog yeast ribosomal proteins RPL8A (eL8A) and RPL8B (eL8B) change their relative proportions in the 80S ribosome when yeast is switched from growth in glucose to glycerol. By using yeast genetics and polysome profiling, it is shown that yeast ribosomes containing either RPL8A or RPL8B are not functionally interchangeable. The quantitative proteomic data support the hypothesis that ribosomes are dynamic complexes that alter their composition and functional activity in response to changes in growth or environmental conditions.

Indexed as

Cryoprotective AgentsGlucoseGlycerolMass SpectrometryPolyribosomesRibosomal ProteinsRibosomesSaccharomyces cerevisiaeSweetening AgentsCryoprotective AgentsGlucoseGlycerolribosomal protein L4Ribosomal ProteinsSweetening Agentscarbon source switchribosome filterribosome heterogeneityRPL8A/B

Identifiers

PMID30211483
PMCPMC6443404
OpenAlexW2890021730

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.