Evidence map›Paper›PMID 30209551›Full record

ArticleApplied microbiology and biotechnology2018

Gene cloning and seamless site-directed mutagenesis using single-strand annealing (SSA).

Zhixin Luo, Shanhe Wang, Beilei Jiao, Dan Yuan, Dongmei Dai, Lixian Wang, Kun Xu, Xin Wang

Abstract read
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In one paragraph

Article in Applied microbiology and biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Cloning Method for Stress-Resistant Gene ofJournal of healthcare engineering · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhixin LuoCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Shanhe WangCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Beilei JiaoCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Dan YuanCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Dongmei DaiCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Lixian WangCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Kun XuCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China. xukunas@nwsuaf.edu.cn.
Xin WangCollege of Animal Science and Technology, Northwest A&F University, Yangling, 712100, Shaanxi, China. wxwza@126.com.

Funding

National Natural Science Foundation of China 31702099National Natural Science Foundation of China 31772573,31472068
6 · The paper itself

Abstract

The full length of interested genes can be usually cloned by assembling exons or RACE products through overlap PCR. However, the procedure requires multiple PCR steps, which are prone to random mutagenesis. Here, we present a novel SSA-based method for gene cloning and seamless site-directed mutagenesis. We firstly cloned the full-length coding sequence of Cashmere goat (Capra hircus) Hoxc13 gene by assembling exons amplified from genomic DNA. Secondly, we created a Hoxc13 loss-function mutant seamlessly and further illustrated that direct repeat length of 25 bp is enough to trigger the SSA repair in routine E. coli strains including DH5α, Trans1t1, JM109, and Top10. Moreover, we cloned another full-length mutant of Foxn1 gene from Cashmere goat cDNA using further shortened direct repeats of 19 bp. In summary, our study provided an alternative method to overcome the difficulties during overlap PCR in some particular cases for gene cloning.

Indexed as

Cloning, MolecularDNA, ComplementaryDNA RepairExonsAnimalsDNA Breaks, Double-StrandedGenomeGoatsHomeodomain ProteinsMutagenesis, Site-DirectedMutationOpen Reading FramesDNA, ComplementaryHomeodomain ProteinscDNA cloningExon assemblyGene cloningSingle-strand annealingSite-directed mutagenesis

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.