Evidence map›Paper›PMID 30208840›Full record

ArticleBMC plant biology2018

The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts.

Shoudong Zhang, Huoming Zhang, Yiji Xia, Liming Xiong

Open access · goldAbstract read
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Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 4 countries.

Shoudong ZhangDepartment of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong SAR, China. shoudongzhang@cuhk.edu.hk.ORCID http://orcid.org/0000-0001-7332-7627
Huoming ZhangCore labs, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Yiji XiaDepartment of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong SAR, China. yxia@hkbu.edu.hk.
Liming XiongDivision of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia. liming.xiong@ag.tamu.edu.
Hong Kong Baptist University · HKKing Abdullah University of Science and Technology · SATexas A&M University System · US

Funding

Hong Kong Baptist University frg2/16-17/026Hong Kong Baptist University SDF 15-1012-P04King Abdullah University of Science and Technology BAS/1/1007-01-01Research Grants Council, University Grants Committee 12100717University Research Committee, University of Hong Kong AoE/M-403/16
6 · The paper itself

Abstract

backgroundHomeostasis of the proteome is critical to the development of chloroplasts and also affects the expression of certain nuclear genes. CLPC1 facilitates the translocation of chloroplast pre-proteins and mediates protein degradation.

resultsWe found that proteins involved in photosynthesis are dramatically decreased in their abundance in the clpc1 mutant, whereas many proteins involved in chloroplast transcription and translation were increased in the mutant. Expression of the full-length CLPC1 protein, but not of the N-terminus-deleted CLPC1 (ΔN), in the clpc1 mutant background restored the normal levels of most of these proteins. Interestingly, the ΔN complementation line could also restore some proteins affected by the mutation to normal levels. We also found that that the clpc1 mutation profoundly affects transcript levels of chloroplast genes. Sense transcripts of many chloroplast genes are up-regulated in the clpc1 mutant. The level of SVR7, a PPR protein, was affected by the clpc1 mutation. We showed that SVR7 might be a target of CLPC1 as CLPC1-SVR7 interaction was detected through co-immunoprecipitation.

conclusionOur study indicates that in addition to its role in maintaining proteome homeostasis, CLPC1 and likely the CLP proteasome complex also play a role in transcriptome homeostasis through its functions in maintaining proteome homeostasis.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplast ProteinsChloroplastsGenes, PlantHeat-Shock ProteinsHomeostasisMutationProteomeRNA, PlantTranscriptomeArabidopsis ProteinsAT5G50920 protein, ArabidopsisChloroplast ProteinsHeat-Shock ProteinsProteomeRNA, PlantChloroplastCLPC1HomeostasisProteomeSVR7Transcriptome

Identifiers

PMID30208840
PMCPMC6136230
OpenAlexW2891589065

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.