Evidence map›Paper›PMID 30208026›Full record

ArticlePLoS biology2018

Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast.

Yinuo J Wang, Pavanapuresan P Vaidyanathan, Maria F Rojas-Duran, Namrata D Udeshi, Kristen M Bartoli, Steven A Carr, Wendy V Gilbert

Abstract read
In one paragraph

Article in PLoS biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. RiboScreenBiomedicines · 2026
    Review
  5. Article
  6. Review
  7. Detection and Characterization of the Eukaryotic Vacant Ribosome.International journal of molecular sciences · 2025
    Review
  8. Advances in ribosome profiling technologies.Biochemical Society transactions · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Hibernating ribosomes as drug targets?Frontiers in microbiology · 2024
    Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Domesticated LTR-RetrotransposonLife (Basel, Switzerland) · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yinuo J WangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America.
Pavanapuresan P VaidyanathanDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Maria F Rojas-DuranDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America.
Namrata D UdeshiThe Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Kristen M BartoliDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Steven A CarrThe Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Wendy V GilbertDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America.

Funding

Ribosome Specialization and RegulationR01GM094303 · NIGMS · YALE UNIVERSITY · PI GILBERT, WENDY VICTORIA · 2012 to 2016
$1.5M
NIGMS NIH HHS R01 GM094303
6 · The paper itself

Abstract

Ribosome-binding proteins function broadly in protein synthesis, gene regulation, and cellular homeostasis, but the complete complement of functional ribosome-bound proteins remains unknown. Using quantitative mass spectrometry, we identified late-annotated short open reading frame 2 (Lso2) as a ribosome-associated protein that is broadly conserved in eukaryotes. Genome-wide crosslinking and immunoprecipitation of Lso2 and its human ortholog coiled-coil domain containing 124 (CCDC124) recovered 25S ribosomal RNA in a region near the A site that overlaps the GTPase activation center. Consistent with this location, Lso2 also crosslinked to most tRNAs. Ribosome profiling of yeast lacking LSO2 (lso2Δ) revealed global translation defects during recovery from stationary phase with translation of most genes reduced more than 4-fold. Ribosomes accumulated at start codons, were depleted from stop codons, and showed codon-specific changes in occupancy in lso2Δ. These defects, and the conservation of the specific ribosome-binding activity of Lso2/CCDC124, indicate broadly important functions in translation and physiology.

Indexed as

Conserved SequenceProtein BiosynthesisAmino Acid SequenceCodon, InitiatorGene Expression Regulation, FungalHeLa CellsHumansPeptide Chain Elongation, TranslationalPeptide Chain Termination, TranslationalRibosomal ProteinsRibosomesRNA, RibosomalRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCodon, InitiatorLSO2 protein, S cerevisiaeRibosomal ProteinsRNA, RibosomalRNA, ribosomal, 25SRNA, TransferSaccharomyces cerevisiae Proteins

Identifiers

PMID30208026
PMCPMC6135351

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.