Evidence map›Paper›PMID 30207827›Full record

ArticleMolecular biology of the cell2018

Geometric partitioning of cohesin and condensin is a consequence of chromatin loops.

Josh Lawrimore, Ayush Doshi, Brandon Friedman, Elaine Yeh, Kerry Bloom

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  12. Review
  13. Mitotic chromosome organization: General rules meet species-specific variability.Computational and structural biotechnology journal · 2020
    Review
  14. Review
  15. The regulation of chromosome segregation via centromere loops.Critical reviews in biochemistry and molecular biology · 2019
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Josh LawrimoreCurriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Ayush DoshiBiology Department, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Brandon FriedmanBiology Department, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Elaine YehBiology Department, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Kerry BloomBiology Department, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
University of North Carolina at Chapel Hill · US

Funding

Structure and Function of a Eukaryotic CentromereR01GM032238 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BLOOM, KERRY S · 1985 to 2025
$6.2M
NRSA IN GENETICST32GM007092 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SEKELSKY, JEFF J. · 1985 to 2019
$5.9M
Structure and Function of a Eukaryotic CentromereR37GM032238 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BLOOM, KERRY S, YEH, ELAINE YING · 2011 to 2020
$5.2M
Big Data to Knowledge Training ProgramT32CA201159 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FOREST, MARK GREGORY, KOSOROK, MICHAEL R · 2015 to 2015
$316k
NCI NIH HHS T32 CA201159NIGMS NIH HHS R01 GM032238NIGMS NIH HHS R37 GM032238NIGMS NIH HHS T32 GM007092
6 · The paper itself

Abstract

SMC (structural maintenance of chromosomes) complexes condensin and cohesin are crucial for proper chromosome organization. Condensin has been reported to be a mechanochemical motor capable of forming chromatin loops, while cohesin passively diffuses along chromatin to tether sister chromatids. In budding yeast, the pericentric region is enriched in both condensin and cohesin. As in higher-eukaryotic chromosomes, condensin is localized to the axial chromatin of the pericentric region, while cohesin is enriched in the radial chromatin. Thus, the pericentric region serves as an ideal model for deducing the role of SMC complexes in chromosome organization. We find condensin-mediated chromatin loops establish a robust chromatin organization, while cohesin limits the area that chromatin loops can explore. Upon biorientation, extensional force from the mitotic spindle aggregates condensin-bound chromatin from its equilibrium position to the axial core of pericentric chromatin, resulting in amplified axial tension. The axial localization of condensin depends on condensin's ability to bind to chromatin to form loops, while the radial localization of cohesin depends on cohesin's ability to diffuse along chromatin. The different chromatin-tethering modalities of condensin and cohesin result in their geometric partitioning in the presence of an extensional force on chromatin.

Indexed as

Adenosine TriphosphatasesCell Cycle ProteinsCentromereChromatidsChromatinChromosomal Proteins, Non-HistoneCohesinsDNADNA-Binding ProteinsMetaphaseModels, BiologicalMultiprotein ComplexesSaccharomyces cerevisiaeAdenosine TriphosphatasesCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCohesinscondensin complexesDNADNA-Binding ProteinsMultiprotein Complexes

Identifiers

PMID30207827
PMCPMC6249845
OpenAlexW2889931048

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.