Evidence map›Paper›PMID 30206276›Full record

ArticleScientific reports2018

Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect.

Svetlana Pylaeva, Martin Brehm, Daniel Sebastiani

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Assignment of a Physical Energy Scale for the Dimensionless Interaction Energies within the PRIME20 Peptide Model.Chemphyschem : a European journal of chemical physics and physical chemistry · 2024
    Article
  9. Article
  10. CytochromeiScience · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. DiffBond: A Method for Predicting Intermolecular Bond Formation.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2021
    Article
  19. A systematic analysis of the beta hairpin motif in the Protein Data Bank.Protein science : a publication of the Protein Society · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Svetlana PylaevaMartin Luther University Halle-Wittenberg, Institute of Physical Chemistry, 06120, Halle, Saale, Germany.
Martin BrehmMartin Luther University Halle-Wittenberg, Institute of Physical Chemistry, 06120, Halle, Saale, Germany.ORCID 0000-0002-6861-459X
Daniel SebastianiMartin Luther University Halle-Wittenberg, Institute of Physical Chemistry, 06120, Halle, Saale, Germany. daniel.sebastiani@chemie.uni-halle.de.ORCID 0000-0003-2240-3938

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) Br 5494/1-1Deutsche Forschungsgemeinschaft (German Research Foundation) SFB-TRR 102 project A09
6 · The paper itself

Abstract

Salt bridges are elementary motifs of protein secondary and tertiary structure and are commonly associated with structural driving force that increases stability. Often found on the interface to the solvent, they are highly susceptible to solvent-solute interactions, primarily with water but also with other cosolvents (especially ions). We have investigated the interplay of an Arginine-Aspartic acid salt bridge with simple salt ions in aqueous solution by means of molecular dynamics simulations. Besides structural and dynamical features at equilibrium, we have computed the mean force along the dissociation pathway of the salt bridge. We demonstrate that solvated ions influence the behavior of the salt bridge in a very specific and local way, namely the formation of tight ionic pairs Li

Indexed as

ThermodynamicsArginineIonsMolecular Dynamics SimulationProteinsProtein Structure, SecondaryProtein Structure, TertiarySaltsSolutionsSolventsWaterArginineIonsProteinsSaltsSolutionsSolventsWater

Identifiers

PMID30206276
PMCPMC6133928

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.