Evidence map›Paper›PMID 30206241›Full record

ArticleScientific reports2018

Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA.

Satabdi Mishra, Tofayel Ahmed, Anu Tyagi, Jian Shi, Shashi Bhushan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 49 citations in OpenAlex.

  1. Ribosome hibernation in zinc-starvedMicrobiology spectrum · 2026
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  5. Future Research Directions on Mycobacterium tuberculosis Proteins.Advances in experimental medicine and biology · 2026
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  10. Development of 2nd generation aminomethyl spectinomycins that overcome native efflux inProceedings of the National Academy of Sciences of the United States of America · 2024
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  14. Cryo-EM structure ofEmerging microbes & infections · 2022
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Role of Hibernation Promoting Factor in Ribosomal Protein Stability duringInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Satabdi MishraSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Tofayel AhmedSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Anu TyagiSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Jian ShiCenter for BioImaging Sciences, National University of Singapore, Singapore, Singapore.
Shashi BhushanSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore. sbhushan@ntu.edu.sg.
Nanyang Technological University · SGNational University of Singapore · SG

Funding

Ministry of Education - Singapore (MOE) 2014-T1–001-019
6 · The paper itself

Abstract

Ribosomes are the dynamic protein synthesis machineries of the cell. They may exist in different functional states in the cell. Therefore, it is essential to have structural information on these different functional states of ribosomes to understand their mechanism of action. Here, we present single particle cryo-EM reconstructions of the Mycobacterium smegmatis 70S ribosomes in the hibernating state (with HPF), trans-translating state (with tmRNA), and the P/P state (with P-tRNA) resolved to 4.1, 12.5, and 3.4 Å, respectively. A comparison of the P/P state with the hibernating state provides possible functional insights about the Mycobacteria-specific helix H54a rRNA segment. Interestingly, densities for all the four OB domains of bS1 protein is visible in the hibernating 70S ribosome displaying the molecular details of bS1-70S interactions. Our structural data shows a Mycobacteria-specific H54a-bS1 interaction which seems to prevent subunit dissociation and degradation during hibernation without the formation of 100S dimer. This indicates a new role of bS1 protein in 70S protection during hibernation in Mycobacteria in addition to its conserved function during translation initiation.

Indexed as

Binding SitesCryoelectron MicroscopyModels, MolecularMycobacterium smegmatisNucleic Acid ConformationProtein BindingProtein BiosynthesisProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsRibosomal ProteinsRibosomesRNA, BacterialRNA, RibosomalRNA, TransferRibosomal ProteinsRNA, BacterialRNA, RibosomalRNA, TransfertmRNA

Identifiers

PMID30206241
PMCPMC6133939
OpenAlexW2892309109

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.