Evidence map›Paper›PMID 30206123›Full record

ArticleThe Journal of biological chemistry2018

Conformational heterogeneity of the allosteric drug and metabolite (ADaM) site in AMP-activated protein kinase (AMPK).

Xin Gu, Michael D Bridges, Yan Yan, Parker W de Waal, X Edward Zhou, Kelly M Suino-Powell, H Eric Xu, Wayne L Hubbell, Karsten Melcher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Structure and Physiological Regulation of AMPK.International journal of molecular sciences · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Xin GuFrom the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503.
Michael D Bridgesthe Jules Stein Eye Institute and Department of Chemistry and Biochemistry, UCLA School of Medicine, University of California, Los Angeles, California 90095-7008, and.
Yan YanFrom the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503.
Parker W de WaalFrom the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503.
X Edward ZhouFrom the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503.
Kelly M Suino-PowellFrom the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503.
H Eric XuFrom the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503.
Wayne L Hubbellthe Jules Stein Eye Institute and Department of Chemistry and Biochemistry, UCLA School of Medicine, University of California, Los Angeles, California 90095-7008, and.
Karsten MelcherFrom the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503, Karsten.melcher@vai.org.ORCID 0000-0002-9125-4027
Van Andel Institute · USUniversity of California, Los Angeles · US

Funding

Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
TR&D Project 3P41EB001980 · NIBIB · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2003 to 2017
$16.3M
MOLECULAR BASIS OF MEMBRANE EXCITATIONR01EY005216 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HUBBELL, WAYNE L · 1985 to 2019
$9.8M
Vision Science Training ProgramT32EY007026 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Alapakkam P Sampath · 1985 to 2026
$5.7M
Structural Genomics of Orphan Nuclear ReceptorsR01DK071662 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2005 to 2017
$5.1M
Structural and functional analysis of a dynamic ABA signaling complexR01GM102545 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI MELCHER, KARSTEN · 2012 to 2014
$1.1M
Structural Mechanisms of AMPK RegulationR01GM129436 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI MELCHER, KARSTEN · 2018 to 2019
$767k
NEI NIH HHS P30 EY000331NEI NIH HHS R01 EY005216NEI NIH HHS T32 EY007026NIBIB NIH HHS P41 EB001980NIDDK NIH HHS R01 DK071662NIGMS NIH HHS R01 GM102545NIGMS NIH HHS R01 GM129436
6 · The paper itself

Abstract

AMP-activated protein kinase (AMPK) is a master regulator of energy homeostasis and a promising drug target for managing metabolic diseases such as type 2 diabetes. Many pharmacological AMPK activators, and possibly unidentified physiological metabolites, bind to the allosteric drug and metabolite (ADaM) site at the interface between the kinase domain (KD) in the α-subunit and the carbohydrate-binding module (CBM) in the β-subunit. Here, using double electron-electron resonance (DEER) spectroscopy, we demonstrate that the CBM-KD interaction is partially dissociated and the interface highly disordered in the absence of pharmacological ADaM site activators as inferred from a low depth of modulation and broad DEER distance distributions. ADaM site ligands such as 991, and to a lesser degree phosphorylation, stabilize the KD-CBM association and strikingly reduce conformational heterogeneity in the ADaM site. Our findings that the ADaM site, formed by the KD-CBM interaction, can be modulated by diverse ligands and by phosphorylation suggest that it may function as a hub for integrating regulatory signals.

Indexed as

Adenosine MonophosphateAllosteric RegulationAMP-Activated Protein KinasesBenzimidazolesBenzoatesBinding SitesCatalytic DomainCrystallography, X-RayHumansLigandsProtein ConformationProtein Domains5-((6-chloro-5-(1-methylindol-5-yl)-1H-benzimidazol-2-yl)oxy)-2-methylbenzoic acidAdenosine MonophosphateAMP-Activated Protein KinasesBenzimidazolesBenzoatesLigandsADaM siteAMP-activated kinase (AMPK)biophysicscancerDEERdiabetesmetabolic regulation

Identifiers

PMID30206123
PMCPMC6222100
OpenAlexW2891186759

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.