Evidence map›Paper›PMID 30205593›Full record

ArticleViruses2018

The RNA Capping Enzyme Domain in Protein A is Essential for Flock House Virus Replication.

Tania Quirin, Yu Chen, Maija K Pietilä, Deyin Guo, Tero Ahola

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Nodavirus RNA replication crown architecture reveals proto-crown precursor and viral protein A conformational switching.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Tania QuirinDepartment of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Viikinkaari 9 (P.O. Box 56), 00014 Helsinki, Finland. tania.quirin@helsinki.fi.
Yu ChenState Key Laboratory of Virology, Modern Virology Research Center, College of Life Sciences, Wuhan University, Wuhan 430072, China. chenyu@whu.edu.cn.
Maija K PietiläDepartment of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Viikinkaari 9 (P.O. Box 56), 00014 Helsinki, Finland. maija.pietilae@uzh.ch.
Deyin GuoSchool of Medicine, Sun Yat-sen University, Guangzhou 510080, China. guodeyin@mail.sysu.edu.cn.
Tero AholaDepartment of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Viikinkaari 9 (P.O. Box 56), 00014 Helsinki, Finland. tero.ahola@helsinki.fi.
University of Helsinki · FISun Yat-sen University · CNWuhan University · CN

Funding

Academy of Finland 307802
6 · The paper itself

Abstract

The nodavirus flock house virus (FHV) and the alphavirus Semliki Forest virus (SFV) show evolutionarily intriguing similarities in their replication complexes and RNA capping enzymes. In this study, we first established an efficient FHV trans-replication system in mammalian cells, which disjoins protein expression from viral RNA synthesis. Following transfection, FHV replicase protein A was associated with mitochondria, whose outer surface displayed pouch-like invaginations with a 'neck' structure opening towards the cytoplasm. In mitochondrial pellets from transfected cells, high-level synthesis of both genomic and subgenomic RNA was detected in vitro and the newly synthesized RNA was of positive polarity. Secondly, we initiated the study of the putative RNA capping enzyme domain in protein A by mutating the conserved amino acids H93, R100, D141, and W215. RNA replication was abolished for all mutants inside cells and in vitro except for W215A, which showed reduced replication. Transfection of capped RNA template did not rescue the replication activity of the mutants. Comparing the efficiency of SFV and FHV trans-replication systems, the FHV system appeared to produce more RNA. Using fluorescent marker proteins, we demonstrated that both systems could replicate in the same cell. This work may facilitate the comparative analysis of FHV and SFV replication.

Indexed as

Genes, EssentialVirus ReplicationDNA Mutational AnalysisGenes, ViralMethyltransferasesNodaviridaeRNA-Dependent RNA PolymeraseViral ProteinsMethyltransferasesmRNA (nucleoside-O(2'))-methyltransferaseRNA-Dependent RNA PolymeraseViral Proteinsalphavirusnodavirusreplication complexRNA capping enzymeRNA replication

Identifiers

PMID30205593
PMCPMC6165433
OpenAlexW2889595184

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.