Evidence map›Paper›PMID 30205312›Full record

ReviewCurrent opinion in chemical biology2018

Expansion of the genetic code via expansion of the genetic alphabet.

Vivian T Dien, Sydney E Morris, Rebekah J Karadeema, Floyd E Romesberg

Open access · greenAbstract readReview
In one paragraph

Review in Current opinion in chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. How To Quantify a Genetic Firewall? A Polarity-Based Metric for Genetic Code Engineering.Chembiochem : a European journal of chemical biology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Basic principles of the genetic code extension.Royal Society open science · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Vivian T DienDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA.
Sydney E MorrisDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA.
Rebekah J KaradeemaDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA.
Floyd E RomesbergDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: floyd@scripps.edu.
Scripps Research Institute · US

Funding

A semi-synthetic organism that stores and retrieves increased genetic informationR35GM118178 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ROMESBERG, FLOYD E. · 2016 to 2018
$2.1M
Engineering translation machinery for a semi-synthetic organismF31GM128376 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI KARADEEMA, REBEKAH J · 2018 to 2020
$96k
NIGMS NIH HHS F31 GM128376NIGMS NIH HHS R35 GM118178
6 · The paper itself

Abstract

Current methods to expand the genetic code enable site-specific incorporation of non-canonical amino acids (ncAAs) into proteins in eukaryotic and prokaryotic cells. However, current methods are limited by the number of codons possible, their orthogonality, and possibly their effects on protein synthesis and folding. An alternative approach relies on unnatural base pairs to create a virtually unlimited number of genuinely new codons that are efficiently translated and highly orthogonal because they direct ncAA incorporation using forces other than the complementary hydrogen bonds employed by their natural counterparts. This review outlines progress and achievements made towards developing a functional unnatural base pair and its use to generate semi-synthetic organisms with an expanded genetic alphabet that serves as the basis of an expanded genetic code.

Indexed as

Genetic CodeAmino AcidsAnimalsBase PairingDNAGenetic EngineeringHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsAmino AcidsDNA

Identifiers

PMID30205312
PMCPMC6361380
OpenAlexW2890840633

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.