Evidence map›Paper›PMID 30204798›Full record

ArticlePloS one2018

Correlating blood-based DNA methylation markers and prostate cancer risk in African-American men.

Emmanuel Moses-Fynn, Wei Tang, Desta Beyene, Victor Apprey, Robert Copeland, Yasmine Kanaan, Bernard Kwabi-Addo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Trial
  2. Review
  3. Dynamic changes of DNA methylation induced by benzo(a)pyrene in cancer.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2023
    Review
  4. Review
  5. Article
  6. Article
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  8. Review
  9. Observational
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Emmanuel Moses-FynnDepartment of Biomedical Sciences, University of Maine, Orono, Maine, United States of America.
Wei TangLaboratory of Human Carcinogenesis, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, Maryland, United States of America.
Desta BeyeneDepartment of Microbiology, Howard University, Washington, D.C., United States of America.
Victor AppreyDepartment of Microbiology, Howard University, Washington, D.C., United States of America.
Robert CopelandDepartment of Pharmacology, Howard University, Washington, D.C., United States of America.
Yasmine KanaanDepartment of Microbiology, Howard University, Washington, D.C., United States of America.
Bernard Kwabi-AddoDepartment of Biochemistry and Molecular Biology, Howard University, Washington, D.C., United States of America.ORCID 0000-0003-3692-6350
Howard University · USNational Institutes of Health · USUniversity of Maine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The objective of this work was to investigate the clinical significance of promoter gene DNA methylation changes in whole blood from African-American (AA) men with prostate cancer (PCa). We used high throughput pyrosequencing analysis to quantify percentage DNA methylation levels in a panel of 8 genes (RARβ2, TIMP3, SPARC, CDH13, HIN1, LINE1, CYB5R2 and DRD2) in blood DNA obtained from PCa and non-cancerous controls cases. Correlations of methylation status and various clinicopathological features were evaluated. Six genes tested achieved significant difference in DNA methylation levels between the PCa compared to control cases (P < 0.05). The TIMP3 loci demonstrated significant correlation of DNA methylation with age for all cases analyzed (p < 0.05). We observed an inverse correlation between CDH13 methylation (p = 0.045; r = -0.21) and serum vitamin D level whereas TIMP3 methylation (p = 0.021; r = -0.24) and DRD2 methylation (p = 0.056; r = -0.201) showed inverse correlation with supplementary vitamin D in the cancer cases. We also observed a direct correlation between methylation of RARβ2 (p = 0.0036; r = 0.293) and SPARC (p = 0.0134; r = 0.20) loci with PSA level in the controls but not the cancer cases. In addition, alcohol cases significantly correlated with higher RARβ2 methylation (p = 0.0314) in comparison with non-alcohol cases. Furthermore, we observed an inverse correlation of DRD2 methylation (p = 0.0349; r = -0.343) and Gleason score. Our data suggests that promoter methylation occurred more frequently in the blood of AA PCa and is associated with various clinicopathological features in AA men with PCa.

Indexed as

DNA MethylationAdultAgedBiomarkers, TumorBlack or African AmericanCadherinsCase-Control StudiesCytokinesGenetic MarkersHumansMaleMiddle AgedOsteonectinPromoter Regions, GeneticProstatic NeoplasmsReceptors, Dopamine D2Biomarkers, TumorCadherinsCytokinesDRD2 protein, humanGenetic MarkersH-cadherinOsteonectinRARB2 protein, humanReceptors, Dopamine D2Receptors, Retinoic AcidSCGB3A1 protein, humanSPARC protein, humanTIMP3 protein, humanTissue Inhibitor of Metalloproteinase-3Tumor Suppressor ProteinsVitamin D

Identifiers

PMID30204798
PMCPMC6133349
OpenAlexW2889927942

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.