Evidence map›Paper›PMID 30204430›Full record

ArticleACS synthetic biology2018

Engineered Biosensors from Dimeric Ligand-Binding Domains.

Benjamin W Jester, Christine E Tinberg, Matthew S Rich, David Baker, Stanley Fields

Open access · greenAbstract read
In one paragraph

Article in ACS synthetic biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Saccharomyces cerevisiae as a Heterologous Host for Natural Products.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  8. Article
  9. Tools and systems for evolutionary engineering of biomolecules and microorganisms.Journal of industrial microbiology & biotechnology · 2019
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Benjamin W JesterHoward Hughes Medical Institute , University of Washington , Seattle , Washington 98195 , United States.ORCID 0000-0002-2997-7865
Christine E TinbergDepartment of Biochemistry , University of Washington , Seattle , Washington 98195 , United States.
Matthew S RichDepartment of Genome Sciences , University of Washington , Seattle , Washington 98195 , United States.
David BakerHoward Hughes Medical Institute , University of Washington , Seattle , Washington 98195 , United States.
Stanley FieldsHoward Hughes Medical Institute , University of Washington , Seattle , Washington 98195 , United States.
Howard Hughes Medical Institute · USUniversity of Washington · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

Biosensors are important components of many synthetic biology and metabolic engineering applications. Here, we report a second generation of Saccharomyces cerevisiae digoxigenin and progesterone biosensors based on destabilized dimeric ligand-binding domains that undergo ligand-induced stabilization. The biosensors, comprising one ligand-binding domain monomer fused to a DNA-binding domain and another fused to a transcriptional activation domain, activate reporter gene expression in response to steroid binding and receptor dimerization. The introduction of a destabilizing mutation to the dimer interface increased biosensor dynamic range by an order of magnitude. Computational redesign of the dimer interface and functional selections were used to create heterodimeric pairs with further improved dynamic range. A heterodimeric biosensor built from the digoxigenin and progesterone ligand-binding domains functioned as a synthetic "AND"-gate, with 20-fold stronger response to the two ligands in combination than to either one alone. We also identified mutations that increase the sensitivity or selectivity of the biosensors to chemically similar ligands. These dimerizing biosensors provide additional flexibility for the construction of logic gates and other applications.

Indexed as

LigandsBiosensing TechniquesDigoxigeninDimerizationDNA-Binding ProteinsGenes, ReporterLuciferases, FireflyProgesteroneProtein EngineeringSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsDigoxigeninDNA-Binding ProteinsGAL4 protein, S cerevisiaeLigandsLuciferases, FireflyProgesteroneSaccharomyces cerevisiae ProteinsTranscription Factorsbiosensordirected evolutionligand-binding domainlogic gatenext generation sequencingprotein engineeringtranscription factor

Identifiers

PMID30204430
PMCPMC6317713
OpenAlexW2890536808

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.