ArticleGigaScience2018
Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis).
Article in GigaScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers.
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Who cites it
116 citing papers in PubMed, 249 citations in OpenAlex.
- An engineered nanopore identifies saccharides, amino acids, peptides and ribonucleotides.Nature biotechnology · 2026Article
- SSR marker development for analysis of the genetic diversity and identification of species and infraspecific ranks in the genus Phyllostachys.BMC plant biology · 2026Article
- Transcriptomic and proteomic insights into the molecular mechanism underlying cell wall biosynthesis in Moso bamboo (Phyllostachys edulis).Plant cell reports · 2026Article
- Morphological and molecular evidence clarifies the taxonomic position of Indosasa solearis and reveals the hybrid origin of Sinobambusa (Poaceae: Bambusoideae: Arundinarieae).BMC plant biology · 2026Article
- Identification and Functional Validation of Key Regulatory Genes for Leaf Development in Moso Bamboo (Plants (Basel, Switzerland) · 2026Article
- Identification and validation of stable reference genes via transcriptome analysis for studying sex differentiation in tung tree (Vernicia fordii).BMC genomics · 2026Article
- Fine-Grained Age-Class Identification of Moso Bamboo Using an Improved Lightweight YOLO11 Model.Journal of imaging · 2026Article
- Cutting through the clones: genomic strategies for core collection development in moso bamboo.BMC genomics · 2026Article
- A comparative study of phyllostachys edulis and its dwarf variant phyllostachys edulis 'Tubaeformis' at the anatomical, transcriptomic, and DNA methylation levels.Frontiers in plant science · 2026Article
- Comprehensive characterization of theFrontiers in plant science · 2026Article
- Intercalary meristems revisited: from anatomical regions to cell-resolved fate systems.Forestry research · 2026Article
- Single-nucleus and spatial transcriptomics reveal the cell populations of intercalary meristems in bamboo.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Multi-omics approaches investigate the bitter flavor in the shoot of Bambusa oldhamii Munro.BMC plant biology · 2025Article
- A high-quality chromosome-level genome assembly of herbaceous bamboo species Lithachne pauciflora.Scientific data · 2025Article
- A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus.Scientific data · 2025Article
- Genome-wide identification, characterization, and expression pattern analysis of the glyoxalase gene family in Phyllostachys pubescens during abiotic stresses.BMC plant biology · 2025Article
- Physiology and Transcriptome Analysis of Exogenous GACurrent issues in molecular biology · 2025Article
- Development and Future Prospects of Bamboo Gene Science.International journal of molecular sciences · 2025Review
- Genome-wide identification, characterization and expression analysis of CNGC Genes in moso bamboo (Phyllostachys edulis).BMC plant biology · 2025Article
- Stable isotope labelling and gene expression analysis reveal dynamic nitrogen-supply mechanisms for rapid growth of Moso bamboo.Horticulture research · 2025Article
56 more citing papers are in PubMed but not listed here.
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Authors and funding
25 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Background: Bamboo is one of the most important nontimber forestry products worldwide. However, a chromosome-level reference genome is lacking, and an evolutionary view of alternative splicing (AS) in bamboo remains unclear despite emerging omics data and improved technologies. Results: Here, we provide a chromosome-level de novo genome assembly of moso bamboo (Phyllostachys edulis) using additional abundance sequencing data and a Hi-C scaffolding strategy. The significantly improved genome is a scaffold N50 of 79.90 Mb, approximately 243 times longer than the previous version. A total of 51,074 high-quality protein-coding loci with intact structures were identified using single-molecule real-time sequencing and manual verification. Moreover, we provide a comprehensive AS profile based on the identification of 266,711 unique AS events in 25,225 AS genes by large-scale transcriptomic sequencing of 26 representative bamboo tissues using both the Illumina and Pacific Biosciences sequencing platforms. Through comparisons with orthologous genes in related plant species, we observed that the AS genes are concentrated among more conserved genes that tend to accumulate higher transcript levels and share less tissue specificity. Furthermore, gene family expansion, abundant AS, and positive selection were identified in crucial genes involved in the lignin biosynthetic pathway of moso bamboo. Conclusions: These fundamental studies provide useful information for future in-depth analyses of comparative genome and AS features. Additionally, our results highlight a global perspective of AS during evolution and diversification in bamboo.
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