Evidence map›Paper›PMID 30202444›Full record

ReviewBioData mining2018

Grasping frequent subgraph mining for bioinformatics applications.

Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens

Abstract readReview
In one paragraph

Review in BioData mining, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Mining subgraph coverage patterns from graph transactions.International journal of data science and analytics · 2022
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aida Mrzic1Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.
Pieter Meysman1Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.
Wout Bittremieux1Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.
Pieter Moris1Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.
Boris Cule1Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.
Bart Goethals1Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.
Kris Laukens1Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.ORCID 0000-0002-8217-2564

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Searching for interesting common subgraphs in graph data is a well-studied problem in data mining. Subgraph mining techniques focus on the discovery of patterns in graphs that exhibit a specific network structure that is deemed interesting within these data sets. The definition of which subgraphs are interesting and which are not is highly dependent on the application. These techniques have seen numerous applications and are able to tackle a range of biological research questions, spanning from the detection of common substructures in sets of biomolecular compounds, to the discovery of network motifs in large-scale molecular interaction networks. Thus far, information about the bioinformatics application of subgraph mining remains scattered over heterogeneous literature. In this review, we provide an introduction to subgraph mining for life scientists. We give an overview of various subgraph mining algorithms from a bioinformatics perspective and present several of their potential biomedical applications.

Indexed as

Biological networksFrequent subgraphsGraph motifsPattern discoveryPattern miningSubgraph mining

Identifiers

PMID30202444
PMCPMC6122726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.