Evidence map›Paper›PMID 30202024›Full record

ArticleScientific reports2018

Interaction of TBC1D9B with Mammalian ATG8 Homologues Regulates Autophagic Flux.

Yong Liao, Min Li, Xiaoyun Chen, Yu Jiang, Xiao-Ming Yin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Small but mighty: Atg8s and Rabs in membrane dynamics during autophagy.Biochimica et biophysica acta. Molecular cell research · 2021
    Review
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yong LiaoDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA.
Min LiDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA.
Xiaoyun ChenDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA.
Yu JiangDepartment of Chemical Biology and Pharmacology, University of Pittsburgh, Pittsburgh, PA, USA.
Xiao-Ming YinDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA. xmyin@iupui.edu.
University of Pittsburgh · USIndiana University – Purdue University Indianapolis · USSun Yat-sen University · CN

Funding

Signal integration of the death receptor pathwaysR01CA083817 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YIN, XIAO-MING · 2000 to 2010
$2.1M
The Role of FKBP38 in tumorigenesis associated with Tsc deficiencyR01CA129821 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JIANG, YU · 2008 to 2012
$1.4M
The impact of growth modulation of liver carcinogenesisR01CA111456 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YIN, XIAO-MING · 2005 to 2009
$1.4M
The Role of PP2A in Yeast Cell Cycle ProgressionR01GM068832 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JIANG, YU · 2005 to 2009
$1.1M
NCI NIH HHS R01 CA083817NCI NIH HHS R01 CA111456NCI NIH HHS R01 CA129821NIGMS NIH HHS R01 GM068832
6 · The paper itself

Abstract

Autophagosomes are double-membraned vesicles with cytosolic components. Their destination is to fuse with the lysosome to degrade the enclosed cargo. However, autophagosomes may be fused with other membrane compartments and possibly misguided by the RAB molecules from these compartments. The mechanisms ensuring the proper trafficking are not well understood. Yeast ATG8 and its mammalian homologues are critically involved in the autophagosome formation and expansion. We hypothesized that they could be also involved in the regulation of autophagosome trafficking. Using the yeast two-hybrid system, we found that TBC1D9B, a GTPase activating protein for RAB11A, interacted with LC3B. TBC1D9B could also interact with other mammalian ATG8 homologues. This interaction was confirmed with purified proteins in vitro, and by co-immunoprecipitation in vivo. The interacting domain of TBC1D9B with LC3 was further determined, which is unique and different from the known LC3-interacting region previously defined in other LC3-interacting molecules. Functionally, TBC1D9B could be co-localized with LC3B on the autophagosome membranes. Inhibition of TBC1D9B suppressed the turnover of membrane-bound LC3B and the autophagic degradation of long-lived proteins. TBC1D9B can thus positively regulate autophagic flux, possibly through its GTPase activity to inactivate RAB11A, facilitating the proper destination of the autophagosomes to the degradation.

Indexed as

AnimalsAutophagosomesAutophagyAutophagy-Related Protein 8 FamilyGene Knockdown TechniquesGTPase-Activating ProteinsHEK293 CellsHumansMicrotubule-Associated ProteinsMutagenesis, Site-DirectedProtein Interaction Domains and Motifsrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsRecombinant ProteinsRNA, Small InterferingSaccharomyces cerevisiaeAutophagy-Related Protein 8 FamilyGTPase-Activating ProteinsMAP1LC3B protein, humanMicrotubule-Associated Proteinsrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsRecombinant ProteinsRNA, Small Interfering

Identifiers

PMID30202024
PMCPMC6131546
OpenAlexW2892317102

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.